## page was renamed from FsTutorial/March2015CourseScheduleScenario3
#acl LcnGroup:read,write,delete,revert All:read
'''!FreeSurfer Course, September 26-29'''
Copy of all course slides compiled as a book can be found [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Course_Slides.pdf|here]].
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Our awesome !FreeSurfer shirts can be purchased [[https://freesurfer.threadless.com|here]].
=== 8:00 - 9:30am Registration Desk Open ===
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <
> ** Indicates an optional talk that covers basic/beginner material.
==== Monday, September 26th - Introduction / Single Subject Analysis / ROI Analysis / MR Acquisition ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:30 - 9:00 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Intro to Linux for FreeSurfer Users]] ||talk/demo ||Zeke Kaufman ||
||9:00 - 9:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Stevens & Lilla Zöllei ||
||9:15 - 9:30 ||'''break''' || || ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||11:10 - 11:30 ||'''break''' || || ||
||11:30 - 11:45 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] ||Allison Moreau ||
||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||12:15 - 1:15 ||'''Lunch''' [[https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription?action=AttachFile&do=get&target=CourseMap.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:15 - 1:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zöllei ||
||2:15 - 2:35 ||'''break''' || || ||
||2:35 - 3:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|ROI Analysis]] ||talk ||Doug Greve ||
||3:05 - 3:55 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:55 - 4:25 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Dylan Tisdall ||
||4:25 - 4:55 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||André van der Kouwe ||
||4:55 - 5:15 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated Neuroanatomical Imaging]] ||talk ||Dylan Tisdall ||
Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]
==== Tuesday, September 27th - Group Analysis / Longitudinal Analysis / Troubleshooting ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Copenhagen_Group_Analysis.pptx|Group Analysis]] ||talk ||Emily Lindemer ||
||9:50 - 10:30 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||10:30 - 10:50 ||'''break''' || ||
||10:50 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dng.Copenhagen_multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Doug Greve ||
||11:10 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||11:30 - 11:50 ||QDEC demonstration ||demo ||Doug Greve ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||12:50 - 1:30 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||1:30 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.pptx|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Lilla Zöllei ||
||2:15 - 2:55 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||2:55 - 3:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
||3:25 - 3:45 ||'''break''' || ||
||3:45 - 4:45 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:45 - 5:45 ||Quality Checking a Recon ||demo ||Allison Stevens ||
||6:30 - ? ||Boston Beer Works ||social activity ||staff ||
Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]
'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<
> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:30pm shuttle bus (it leaves on time!). <
> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <
>Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).
==== Wednesday, September 28th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.pptx|Multi-Modal Integration, Part 1: Registration]] ||talk ||Lilla Zöllei ||
||9:30 - 10:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial: Multimodal Registration]] ||tutorial ||staff ||
||10:00 - 10:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_Diffusion.pdf|A Non-Physicist's Intro to Diffusion MRI Physics]] '' '' ||talk ||Dylan Tisdall ||
||10:15 - 10:35 ||'''break''' || ||
||10:35 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||11:15 - 12:00 ||[[FsTutorial/Diffusion_DtiIntegration|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||2:00 - 3:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||3:00 - 3:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|Longitudinal TRACULA]] ||talk ||Anastasia Yendiki ||
||3:10 - 3:30 ||'''break''' || ||
||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni ||
||4:30 - 5:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 1: Preprocessing]] ||talk ||Doug Greve ||
Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]
##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!'''
==== Thursday, September 29th - fMRI Analysis / Multimodal Analysis / Future Directions ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 2: GLM Analysis]] ||talk ||Doug Greve ||
||9:40 - 10:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
||10:40 - 11:00 ||'''break''' & [[https://docs.google.com/forms/d/e/1FAIpQLSeEvgB6Yr-MC3I131_nmOPVrKtrhKHjjoymY050VTbXq0PtRg/viewform|Evaluation]] || ||
||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|Multi-Modal Integration, Part 2]] ||talk ||Doug Greve ||
||11:30 - 12:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis]] ||tutorial ||staff ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:40 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zöllei ||
||1:40 - 2:25 ||Future Directions ||talk ||Bruce Fischl ||
||2:25 - 2:45 ||Question & Answer Session ||-- ||staff ||
Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <
> ** Indicates an optional talk covering basic/beginner material.