Diff for "FsTutorial/StLouis2010CourseSchedule"

Differences between revisions 1 and 15 (spanning 14 versions)

FreeSurfer Course, July 8th and 9th, 2010

Washington University, St. Louis, Missouri

Thursday, July 8th - Introduction / Single Subject / Group Analysis/ CVS / DTI / Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	Introduction to Freesurfer	talk	Lilla Zollei
9:30 - 10:15	Analyzing the Individual Subject - Part I	talk	Allison Stevens
10:15 - 11:00	Group Analysis / GLM / Multiple Comparisons	talk	Lilla Zollei
11:00 - 11:15	break
11:15 - 12:15	Introduction to Surface-based Registration, Combined Volume and Surface Registration	talk	Lilla Zollei
12:15 - 1:00	Lunch	--	--
1:00 - 1:45	Introduction to Diffusion Processing/Tractography	talk	Lilla Zollei
1:45 - 2:15	Analyzing the Individual Subject - Part II	talk	Allison Stevens
2:15 - 2:45	Data Troubleshooting	talk	Allison Stevens
2:45 - 3:00	break - move to computer room (Becker 601 A/B) for tutorials and demo
3:00 - 3:30	Tkmedit/Tksurfer/Troubleshooting Demos	demo	Allison Stevens
3:30 - 4:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
4:15 - 5:15	Troubleshooting Tutorial	tutorial	staff

Friday, July 9th - Longitudinal / Multi-Modal / ROI / Q&A

Time	Title	Type	Lecturer
8:30 - 9:15	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
9:15 - 10:30	ROI Analysis	talk	Allison Stevens
10:30 - 11:00	Multi-Modal Integration	talk	Lilla Zollei
11:00 - 11:30	break - move to computer room (Becker 601 A/B) for tutorials and demo'
11:30 - 12:15	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
12:15 - 1:15	Lunch	--	--
1:15 - 1:30	QDEC demonstration	demo	Nick Schmansky
1:30 - 2:15	Group Analysis - qdec Tutorial	tutorial	staff
2:15 - 3:15	Multi-Modal Integration Tutorial	tutorial	staff
3:15 - 3:30	break
3:30 - 4:00	ROI Analysis Tutorial	tutorial	staff
4:00 -	Question and Answer Session	talk	staff
-	optional - FreeSurfer Installation on Personal Laptops	one-on-one	staff
-	optional - Start Processing Your Own Data	one-on-one	staff

FsTutorial/StLouis2010CourseSchedule (last edited 2010-07-09 11:30:01 by NickSchmansky)

-  ⇤ ← Revision 1 as of 2010-06-29 15:28:09 → 
  Size: 5120
  Editor: NickSchmansky
  Comment:
+   ← Revision 15 as of 2010-07-09 11:08:57 → ⇥
  Size: 3720
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 5:
-=== Thursday, July 8th - Introduction / Single Subject / ROIs /Group Analysis ===
+=== Thursday, July 8th - Introduction / Single Subject / Group Analysis/ CVS / DTI / Troubleshooting ===
 Line 8:
-|| 8:00 - 8:30 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]]  || tutorial || Allison Stevens ||
|| 8:30 - 9:00 || Course Registration || sign-in || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
|| 10:30 - 10:45 || '''break''' || || ||
|| 10:45 - 11:15  || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 11:15 - 11:45 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||
|| 11:45 - 12:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 12:15 - 12:45 || '''Working lunch''' Optional talk - [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei ||
|| 12:45 - 1:15 || '''Working lunch''' Optional talk - [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe ||
|| 1:15 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 2:15 - 2:45 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||
|| 2:45 - 3:00 || '''break''' || || ||
|| 3:00 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 4:45 - 5:00 || QDEC demonstration || demo || Nick Schmansky ||
|| 5:00 - 5:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:45 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
+|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/LZ.freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]]|| talk || Lilla Zollei ||
|| 9:30 - 10:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Analyzing_Ind_Subject_wiki.ppt|Analyzing the Individual Subject - Part I|&do=get]] || talk|| Allison Stevens ||
|| 10:15 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/LZ.freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Lilla Zollei ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 12:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/LZ.fs.surface-based-analysis.ppt|Introduction to Surface-based Registration, Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 12:15 - 1:00 || Lunch || -- || -- ||
|| 1:00 - 1:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/LZ.fs.dt_recon-intro.ppt|Introduction to Diffusion Processing/Tractography|&do=get]] || talk || Lilla Zollei ||
|| 1:45 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Analyzing_Ind_Subject_wiki.ppt|Analyzing the Individual Subject - Part II|&do=get]] || talk|| Allison Stevens ||
|| 2:15 - 2:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes_wiki.ppt|Data Troubleshooting|&do=get]] || talk || Allison Stevens ||
|| 2:45 - 3:00 || '''break - move to computer room (Becker 601 A/B) for tutorials and demo''' || || ||
|| 3:00 - 3:30 || Tkmedit/Tksurfer/Troubleshooting Demos || demo || Allison Stevens ||
|| 3:30 - 4:15 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||
|| 4:15 - 5:15 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] || tutorial || staff ||
-Line 28:
+Line 22:
-=== Friday, July 9th - Troubleshooting / Multi-Modal / Q&A / Future Directions ===
+=== Friday, July 9th - Longitudinal / Multi-Modal / ROI / Q&A ===
-Line 31:
+Line 26:
-|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||
|| 10:00 - 10:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 10:45 - 11:00 || '''break''' || || ||
|| 11:00 - 11:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 11:30 - 12:30 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]], Troubleshooting Demonstration|| tutorial || staff, Allison ||
|| 12:30 - 1:00 || '''Working lunch''' Optional demo - Step-by-Step Through a Recon || demo || TBD ||
|| 1:00 - 1:30 || '''Working lunch''' Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat ||
|| 1:30 - 2:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 2:45 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
|| 3:45 - 4:00 || '''break''' || || ||
|| 4:00 - 5:00 || Future Directions of !FreeSurfer: || || ||
|| 4:00 - 4:20 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 4:20 - 4:40|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:00 - 5:30 || Question and Answer Session, FsQuiz || talk || staff ||
+|| 8:30 - 9:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||
|| 9:15 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi_wiki.ppt|ROI Analysis|&do=get]] || talk || Allison Stevens ||
|| 10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/LZ.fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Lilla Zollei ||
|| 11:00 - 11:30 || '''break - move to computer room (Becker 601 A/B) for tutorials and demo'''' || || ||
|| 11:30 - 12:15 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 12:15 - 1:15 || Lunch || -- || -- ||
|| 1:15 - 1:30 || QDEC demonstration || demo || Nick Schmansky ||
|| 1:30 - 2:15 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 2:15 - 3:15 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
|| 3:15 - 3:30 || '''break''' || || ||
|| 3:30 - 4:00 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||
|| 4:00 -  || Question and Answer Session || talk || staff ||
|| - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || staff  ||
|| - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || staff ||