Diff for "FsTutorial/ToursMay2016CourseSchedule"

Differences between revisions 1 and 18 (spanning 17 versions)

FreeSurfer Course, May 26 - May 27, 2016

7:30 - 9:30am Registration Desk Open

Thursday, May 26th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Caroline Magnain
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Caroline Magnain
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Lilla Zollei
10:00 - 11:10	Analyzing the Individual Subject	talk	Lilla Zollei
11:10 - 11:30	break
11:30 - 12:10	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Iman Aganj
12:10 - 1:10	Lunch	--	--
1:10 - 1:30	Freeview demonstration	demo	Allison Moreau
1:30 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk	Allison Moreau
3:00 - 3:20	break
3:20 - 3:50	Quality Checking a Recon	demo	Allison Moreau
3:50 - 4:50	Troubleshooting Tutorial	tutorial	staff
4:50 - 5:30	FibreAtlas Project (optional)	talk	Christophe Destrieux

Friday, May 27th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis	talk	Lilla Zollei
10:00 - 10:20	QDEC demonstration	demo	Lilla Zollei
10:20 - 10:40	break
10:40 - 11:10	QDEC Tutorial	tutorial	staff
11:10 - 12:00	OCT talk (optional)	talk	Caroline Magnain
12:00 - 1:00	Lunch	--	--
1:00 - 1:40	Introduction to Diffusion MRI	talk	Iman Aganj
1:40 - 2:30	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Iman Aganj
2:30 - 3:15	Tracula Tutorial	tutorial	staff
3:15 - 3:30	break & Evaluation
3:30 - 4:30	Multi-Modal Integration	talk	Iman Aganj
4:30 - 5:30	Multi-Modal Integration Tutorial	tutorial	staff
5:30 - 6:00	Exvivo and Histology Processing (optional)	talk	Allison Moreau & Lilla Zollei

-  ⇤ ← Revision 1 as of 2015-07-28 10:17:37 → 
  Size: 7807
  Editor: AllisonStevens
  Comment:
+   ← Revision 18 as of 2016-05-11 15:39:00 → ⇥
  Size: 3592
  Editor: ImanAganj
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 3:
-'''!FreeSurfer Course, September 28 - Oct 1'''
+'''!FreeSurfer Course, May 26 - May 27, 2016'''
 Line 6:
-==== Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting ====
+==== Thursday, May 26th - Introduction / Single Subject Analysis /Troubleshooting ====
 Line 8:
-||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Moreau & Lilla Zollei ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_zjk.pdf|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial || Caroline Magnain ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Caroline Magnain ||
-Line 12:
+Line 11:
-||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||11:10 - 11:30 ||'''break''' || || ||
||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Doug Greve ||
||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee Tirrell ||
+||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Lilla Zollei ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lilla Zollei ||
||11:10 - 11:30 ||'''break''' || ||  ||
||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/surface-based-analysis_FS-course_Tours.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk || Iman Aganj ||
||12:10 - 1:10 ||'''Lunch'''  ||-- ||-- ||
||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] || Allison Moreau||
-Line 19:
+Line 18:
-||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
+||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/freesurfer.failuremodes.ALM.ppt|FreeSurfer Troubleshooting]] ||talk || Allison Moreau||
-Line 21:
+Line 20:
-||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani Varjabedian ||
||4:00 - 5:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo || Allison Moreau||
||3:50 - 4:50 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:50 - 5:30 ||FibreAtlas Project (optional)||talk ||Christophe Destrieux ||
-Line 26:
+Line 25:
-'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).

==== Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI ====
+==== Friday, May 27th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI ====
-Line 30:
+Line 27:
-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||Emily Lindemer ||
+||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Lilla Zollei||
||10:00 - 10:20 ||QDEC demonstration ||demo || Lilla Zollei||
-Line 33:
+Line 30:
-||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Martin Reuter ||
+||10:40 - 11:10 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||11:10 - 12:00 || OCT talk (optional) ||talk ||Caroline Magnain||
-Line 37:
+Line 33:
-||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni ||
||5:30 - 5:45 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||


==== Wednesday, September 30th - fMRI / Multimodal /  Diffusion / Future Directions / Q&A ====
##[[https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:30 - 9:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1]] ||talk ||Doug Greve ||
||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||
||12:40 - 1:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2]] ||talk ||Lilla Zollei ||
||1:10 - 2:25 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||2:25 - 2:45 ||'''break''' & Evaluation || ||
||2:45 - 3:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||3:35 - 4:20 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||4:20 - 4:50 ||Future Directions ||talk ||TBD ||
||4:50 - 5:05 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||


##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!'''
==== Thursday, October 1st - Technical talks ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
||10:50 - 11:20 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]] ||talk ||Andre van der Kouwe ||
||11:20 - 11:50 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging]] ||talk ||Dylan Tisdall ||
+||1:00 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/diffusion_FS-course_Tours.ppt|Introduction to Diffusion MRI]] ||talk || Iman Aganj ||
||1:40 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/tracula_FS-course_Tours.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk || Iman Aganj||
||2:30 - 3:15 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||3:15 - 3:30 ||'''break''' & Evaluation || ||
||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/multimodal-integration_FS-course_Tours.ppt|Multi-Modal Integration]] ||talk || Iman Aganj ||
||4:30 - 5:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||5:30 - 6:00 ||Exvivo and Histology Processing (optional)||talk || Allison Moreau & Lilla Zollei ||