Diff for "FsTutorial/ToursMay2016CourseSchedule"

Differences between revisions 4 and 19 (spanning 15 versions)

FreeSurfer Course, May 26 - May 27, 2016

7:30 - 9:30am Registration Desk Open

Thursday, May 26th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Caroline Magnain
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Caroline Magnain
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Lilla Zollei
10:00 - 11:10	Analyzing the Individual Subject	talk	Lilla Zollei
11:10 - 11:30	break
11:30 - 12:10	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Iman Aganj
12:10 - 1:10	Lunch	--	--
1:10 - 1:30	Freeview demonstration	demo	Allison Moreau
1:30 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk	Allison Moreau
3:00 - 3:20	break
3:20 - 3:50	Quality Checking a Recon	demo	Allison Moreau
3:50 - 4:50	Troubleshooting Tutorial	tutorial	staff
4:50 - 5:30	FibreAtlas Project (optional)	talk	Christophe Destrieux

Friday, May 27th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis	talk	Lilla Zollei
10:00 - 10:20	QDEC demonstration	demo	Lilla Zollei
10:20 - 10:40	break
10:40 - 11:10	QDEC Tutorial	tutorial	staff
11:10 - 12:00	OCT talk (optional)	talk	Caroline Magnain
12:00 - 1:00	Lunch	--	--
1:00 - 1:40	Introduction to Diffusion MRI	talk	Iman Aganj
1:40 - 2:30	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Iman Aganj
2:30 - 3:15	Tracula Tutorial	tutorial	staff
3:15 - 3:30	break & Evaluation
3:30 - 4:30	Multi-Modal Integration	talk	Iman Aganj
4:30 - 5:30	Multi-Modal Integration Tutorial	tutorial	staff
5:30 - 6:00	Exvivo and Histology Processing (optional)	talk	Allison Moreau & Lilla Zollei

-  ⇤ ← Revision 4 as of 2015-07-28 15:33:34 → 
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+   ← Revision 19 as of 2016-05-23 14:32:54 → ⇥
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-Deletions are marked like this.
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-'''!FreeSurfer Course, September 28 - Oct 1'''
+'''!FreeSurfer Course, May 26 - May 27, 2016'''
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-==== Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting ====
+==== Thursday, May 26th - Introduction / Single Subject Analysis /Troubleshooting ====
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-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial || ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||  ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial || Caroline Magnain ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Caroline Magnain ||
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-||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || ||
||11:10 - 11:30 ||'''break''' || || ||
||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||necessary? ||
||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] || ||
+||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Lilla Zollei ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lilla Zollei ||
||11:10 - 11:30 ||'''break''' || ||  ||
||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/surface-based-analysis_FS-course_Tours.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk || Iman Aganj ||
||12:10 - 1:10 ||'''Lunch'''  ||-- ||-- ||
||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] || Allison Moreau||
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-||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk || ||
+||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/freesurfer.failuremodes.ALM.ppt|FreeSurfer Troubleshooting]] ||talk || Allison Moreau||
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-||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||do shortened version ||
||4:00 - 5:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
+||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo || Allison Moreau||
||3:50 - 4:50 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:50 - 5:30 ||FibreAtlas Project (optional)||talk ||Christophe Destrieux ||
-Line 24:
+Line 25:
-==== Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI ====
+==== Friday, May 27th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI ====
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-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk || ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||include if have time ||
+||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/ToursMay2016/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Lilla Zollei||
||10:00 - 10:20 ||QDEC demonstration ||demo || Lilla Zollei||
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-||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||||
+||10:40 - 11:10 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||11:10 - 12:00 || OCT talk (optional) ||talk ||Caroline Magnain||
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-||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk || ||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||lower priority, include if we can ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||


==== Wednesday, September 30th - fMRI / Multimodal /  Diffusion / Future Directions / Q&A ====
##[[https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:30 - 9:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1]] ||talk || ||
||9:45 - 10:00 ||'''break''' || ||
||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||
||12:40 - 1:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2]] ||talk || ||
||1:10 - 2:25 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||2:25 - 2:45 ||'''break''' & Evaluation || ||
||2:45 - 3:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||||
||3:35 - 4:20 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||4:20 - 4:50 ||Future Directions ||talk ||TBD ||
||4:50 - 5:05 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||


##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!'''
==== Thursday, October 1st - Technical talks ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
+||1:00 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/diffusion_FS-course_Tours.ppt|Introduction to Diffusion MRI]] ||talk || Iman Aganj ||
||1:40 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/tracula_FS-course_Tours.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk || Iman Aganj||
||2:30 - 3:15 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||3:15 - 3:30 ||'''break''' & Evaluation || ||
||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/anonftp/pub/docs/ToursMay2016/multimodal-integration_FS-course_Tours.ppt|Multi-Modal Integration]] ||talk || Iman Aganj ||
||4:30 - 5:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||5:30 - 6:00 ||Exvivo and Histology Processing (optional)||talk || Allison Moreau & Lilla Zollei ||