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=== 1.0 N3 intensity normalization: nu_correct <subject name> === | === 1.0 N3 intensity normalization: nu_correct_subject <subject name> === |
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Image before and after comparisons (volume processing pipeline)
attachment:volumepipelineSmall.gif
1.0 N3 intensity normalization: nu_correct_subject <subject name>
attachment:CN3Norm.jpg
2.0 Cortical intensity normalization: mri_normalize orig T1
attachment:CNorm.jpg
3.0 Cortical Talairach: talairach <subject name>
attachment:CTalairach.jpg
4.0 Cortical skull stripping: mri_watershed T1 brain
attachment:CStripping.jpg
5.0 Subcortical intensity normalization: mri_ca_normalize -mask brain nu $GCA transforms/talairach.lta norm
attachment:SCNormAndMask.jpg
6.0 Subcortical segmentation: mri_ca_label norm transforms/talairach.m3d $GCA aseg
attachment:SCSegment.jpg
7.0 Subcortical brain intensity normalization: mri_normalize norm brain
attachment:SCNormBrain.jpg
8.0 Subcortical white matter segmentation: mri_segment brain wm
attachment:SCSegmentWM.jpg
9.0 Auto segmentation Editing: mri_edit_wm_with_aseg wm aseg wm
attachment:SCSegmentEditWM.jpg
10.0 Filling: mri_fill wm filled
attachment:SCfilling.jpg