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- FsTutorial/OutputData_new . . . 9 matches
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= Inspection of Freesurfer Output =
In this exercise you will visualize and inspect correctly...
- FsTutorial/AnatomicalROI_tktools . . . 9 matches
- ...
[[FsTutorial|top]] | [[FsTutorial|previous]]
= Anatomical ROI analysis =
This tutorial gives a brief introduction to anatomical ROI analysis which includes working with label fi...
- FsTutorial/Tools . . . 8 matches
- ...[[FsTutorial|top]]
== FreeSurfer Tutorial: FreeSurfer Tools ==
Tkmedit and tksurfer are two important tools in the !FreeSurfer package.
Tkmedit displays volumetric anatomical ...
- FsTutorial/OutputData_freeviewV6.0 . . . 8 matches
- ...
[[Tutorials|Back to list of all tutorials]]
[[FsTutorial|Back to course page]]
= Introduction to Freesurfer Output =
In this exercise, you will visualize and inspect correctly p...
- FsTutorial/MultipleComparisonsV6.0 . . . 8 matches
- ...[[Tutorials|Back to list of all tutorials]]
[[FsTutorial|Back to course page]]
----
{{{#!html
<h1>Clusterwise Correction for Multiple Comparisons</h1>
}}}
Note: The method used i...
- FsTutorial/GroupAnalysisDng . . . 8 matches
- ...[[FsTutorial|Back to Tutorial Top]]
<<TableOfContents>>
= Introduction =
This tutorial is designed to introduce you to the "command-line" group
analysis stream in FreeSurfer (as...
- FsTutorial/FixingGeomInaccuracies . . . 8 matches
- ...[[FsTutorial|top]] | [[FsTutorial/MorphAndRecon|previous]]
*To follow this exercise exactly be sure you've downloaded the [[FsTutorial/Data|tutorial data set]] before you begin. ...
- FsTutorial/Data . . . 8 matches
- ...[[FsTutorial|top]]
'''Index'''
<<TableOfContents>>
== FreeSurfer Tutorial Datasets ==
## The data set for the Freesurfer tutorials comes in two forms, a "Lightweight" version an...
- FsTutorial/ComputeContrast . . . 8 matches
- ...[[FsTutorial|top]] | [[FsTutorial/GroupAnalysis|previous]]
== Group Analysis command lines ==
*To follow this exercise exactly be sure you've downloaded the [[FsTutorial/Data|tut...
- FsTutorial/Visualization . . . 7 matches
- ...[[FsTutorial|top]] | [[FsTutorial/GroupAnalysis|previous]] | [[FsTutorial/FslFeatFreeSurfer|next]]
= TUTORIAL LOCATION HAS MOVED =
Good news for those of you who are confused by F...
- FsTutorial/PialEdits_tktools . . . 7 matches
- ...
[[FsTutorial|top]] | [[FsTutorial/TroubleshootingData|previous]]
= Correcting Pial Surfaces =
* To follow this exercise exactly be sure you've downloaded the [[FsTutorial/Data|t...
- FsTutorial/OutputDataV6.0 . . . 7 matches
- ...[[Tutorials|Back to list of all tutorials]]
[[FsTutorial|Back to course page]]
= Inspection of Freesurfer Output =
In this exercise you will visualize and inspect correctly proce...
- FsTutorial/MultiModal_tktools . . . 7 matches
- ...
[[FsTutorial|Back to Top Tutorial Page]]
= Multimodal Integration =
The purpose of this tutorial is to get you acquainted with the concepts needed to perform multimodal integrat...
- FsTutorial/FslFeatFreeSurfer . . . 7 matches
- ...[[Tutorials|Back to list of all tutorials]]<<BR>>[[FsTutorial|Back to course page]]<<BR>>
== FreeSurfer Tutorial: Applying FreeSurfer Tools to FSL fMRI Analysis (FEAT) ==
The purp...
- FsTutorial/VolumetricGroupAnalysis . . . 6 matches
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= FreeSurfer Tutorial: Volumetric Group Analysis =
* If you are taking one of the formally organized courses, th...
- FsTutorial/TopologicalDefect_tktools . . . 6 matches
- ...
[[FsTutorial|top]] | [[FsTutorial/TroubleshootingData|previous]]
= Correcting topological defects =
*To follow this exercise exactly be sure you've downloaded the [[FsTutorial/D...
- FsTutorial/TkmeditWorkingWithData . . . 6 matches
- ...[[FsTutorial|top]] | [[FsTutorial/Tools|previous]]
== Working with data ==
=== 1.0 Anatomical volumes ===
'''1.1 Main and aux volumes''' <<BR>>
Tkmedit can hold two anatomical ...
- FsTutorial/RegisterFeatOntoAnatomical . . . 6 matches
- ...[[Tutorials|Back to list of all tutorials]]<<BR>>[[FsTutorial|Back to course page]]<<BR>>[[FsTutorial/FslFeatFreeSurfer|FslFeat Tutorial Homepage]]
----
== Registering FSL Feat ou...
- FsTutorial/MultiModal_freeview . . . 6 matches
- ...[[Tutorials|Back to list of all tutorials]]
[[FsTutorial|Back to course page]]<<BR>>
= Multimodal Integration =
<<BR>> The purpose of these tutorials are to get you acquainted wi...
- FsTutorial/LongSkullStripFix_freeview . . . 6 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Fixing a bad skull strip ==
* To follow this exercise exactly be sure you've downloaded the [[Fs...
- FsTutorial/LongSkullStripFix2_freeview . . . 6 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Fixing a bad skull strip ==
*To follow this exercise exactly be sure you've downloaded the [[FsTu...
- FsTutorial/LongSkullStripFix . . . 6 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Fixing a bad skull strip ==
*To follow this exercise exactly be sure you've downloaded the [[FsT...
- FsTutorial/ControlPoints_tktools . . . 6 matches
- ...
[[FsTutorial|top]] | [[FsTutorial/TroubleshootingData|previous]]
= Using Control Points to Fix Intensity Normalization =
*To follow this exercise exactly be sure you've downloade...
- FsTutorial/AnatomicalROI . . . 6 matches
- ...
[[Tutorials|Back to list of all tutorials]]
[[FsTutorial|Back to course page]]
----
{{{#!html
<h1>Anatomical ROI analysis</h1>
}}}
This tutorial gives a brief introduction to a...
- FsTutorial/WhiteMatterEdits_freeview . . . 5 matches
- ...[[FsTutorial|top]] | [[FsTutorial/TroubleshootingData|previous]]
= Making Edits to the White Matter =
* To follow this exercise exactly be sure you've downloaded the [[FsTutorial...