Results 76 - 100 of 126 results out of about 3772 pages. (1.05 seconds)
- FsTutorial/SnapShot . . . 4 matches
- ...[[FsTutorial|top]]
== FsTutorial Snapshot ==
Snapshots are periodically made of the !FreeSurfer Tutorial, for those who want a print version, or a static copy of the HTML files. ...
- FsTutorial/SkullStripFix_freeview . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/TroubleshootingData|previous]]
= Fixing a bad skull strip =
* To follow this exercise exactly, be sure you've downloaded the [[FsTutorial/Data|t...
- FsTutorial/SkullStripFixV6.0 . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/TroubleshootingDataV6.0|previous]]
= Fixing a bad skull strip =
To follow this exercise exactly, be sure you've downloaded the [[FsTutorial/Data|...
- FsTutorial/RegisterFeatOntoAnatomical.save . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/FslFeatFreeSurfer|previous]]
== Registering FSL Feat output to the anatomical ==
The registration is a multi-step process. Each step is describe...
- FsTutorial/ManualRegistration . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/FuncRegistration|previous]]
*To follow this exercise exactly be sure you've downloaded the [[FsTutorial/Data|tutorial data set]] before you begi...
- FsTutorial/LongPialEdits_freeview . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Making Pial Surfaces Edits ==
* To follow this exercise exactly be sure you've downloaded the [[F...
- FsTutorial/LongPialEdits . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Making Pial Surfaces Edits ==
* To follow this exercise exactly be sure you've downloaded the [[...
- FsTutorial/LongFinalSurflONG_freeview . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Making FinalSurf edits ==
* To follow this exercise exactly be sure you've downloaded the [[FsTu...
- FsTutorial/LongFinalSurflONG . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Making FinalSurf edits ==
*To follow this exercise exactly be sure you've downloaded the [[FsTut...
- FsTutorial/LongControlPoints_freeview . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Using Control Points to Fix Intensity Normalization ==
*To follow this exercise exactly be sure ...
- FsTutorial/LongControlPoints . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]]
== Using Control Points to Fix Intensity Normalization ==
*To follow this exercise exactly be sure ...
- FsTutorial/FinalSurfEx . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/MorphAndRecon|previous]]
*To follow this exercise exactly be sure you've downloaded the [[FsTutorial/Data|tutorial data set]] before you begin. ...
- FsTutorial/Conversion . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/MorphAndRecon|previous]]
*To follow this exercise exactly be sure you've downloaded the [[FsTutorial/Data|tutorial data set]] before you begin. ...
- FsTutorial/CalcarineEdits . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/TroubleshootingData|previous]]
= Making Edits to the Calcarine Sulcus =
* To follow this exercise exactly be sure you've downloaded the [[FsTuto...
- FsTutorial/AutomaticRegistrationSpm . . . 4 matches
- ...[[FsTutorial|top]] | [[FsTutorial/FuncRegistration|previous]]
== Automatic registration using spmregister and verifying results with tkregister2 ==
*To follow this exercise exac...
- FsTutorial/VolumeProcStream . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/MorphAndRecon|previous]]
== Image before and after comparisons (volume processing pipeline) ==
{{attachment:volumepipelineSmall.gif}}
=== 1.0 N...
- FsTutorial/TroubleshootingHints . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/TroubleshootingData|previous]]
= Hints =
The following are some hints to help you identify the problem with the 5 troubleshooting subjects. Fir...
- FsTutorial/TksurferWorkingWithData . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/Tools|previous]]
== Working with data ==
=== 1.0 Surfaces ===
Tksurfer holds one main surface. This surface structure has the surface vertex in...
- FsTutorial/TksurferInterface . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/Tools|previous]]
== Tksurfer interface ==
{{attachment:tksurfer-up-075.jpg}}
{{attachment:tksurfer-down-075.jpg}}
...
- FsTutorial/TkmeditInterface . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/Tools|previous]]
== Tkmedit interface ==
{{attachment:tkmedit-up-new.jpg}}
{{attachment:tkmedit-down-new.jpg}}...
- FsTutorial/PerformEstimation . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/GroupAnalysis|previous]]
== Run mris_glm to perform estimation ==
In order to perform estimation you will first need to change to the tutorial d...
- FsTutorial/MaleFemaleContrastSolution . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/CreateContrastVectors|previous]]
== Contrast vector solution ==
A contrast vector for testing the dataset for a difference between males and fem...
- FsTutorial/FslFeatSegStats . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/MapSegmentationsToFunctionalSpace|previous]]
This is a sample segmentation summary created by mri_segstats. The volume is the volume of the struc...
- FsTutorial/FinalSurfEx.save . . . 3 matches
- ...[[FsTutorial|top]] | [[FsTutorial/MorphAndRecon|previous]]
== Visually check the cortical reconstruction output with tkmedit and tksurfer ==
For each step so far, look at the out...
- FsTutorial/Data_new . . . 3 matches
- ...== FreeSurfer Tutorial Data set ==
Follow the instructions below for running the [[FsTutorial|FreeSurfer tutorials]]. These instruction are valid for both Mac OSX and Linux platfo...