Deletions are marked like this. | Additions are marked like this. |
Line 21: | Line 21: |
== GSL Types and Functions Used == * gsl_matrix * optseq2.c::AR1WhitenMatrix * matrix.c::MatrixToGSL * matrix.c::MatrixFromGSL * matrix.c::MatrixSVDPseudoInverse * gsl_matrix_alloc * matrix.c::MatrixToGSL * matrix.c::MatrixSVDPseudoInverse * gsl_matrix_calloc * optseq2.c::AR1WhitenMatrix * gsl_matrix_free * optseq2.c::AR1WhitenMatrix * matrix.c::MatrixSVDPseudoInverse * gsl_matrix_get * optseq2.c::AR1WhitenMatrix * matrix.c::MatrixFromGSL * gsl_matrix_set * optseq2.c::AR1WhitenMatrix * matrix.c::MatrixFromGSL * gsl_vector * matrix.c::MatrixSVDPseudoInverse * matrix.c::VectorFromGSL * gsl_vector_alloc * matrix.c::MatrixSVDPseudoInverse * gsl_vector_free * matrix.c::MatrixSVDPseudoInverse * gsl_vector_get * matrix.c::VectorFromGSL * gsl_vector_set -- not used * gsl_cdf_fdist_Q * fmriutils.c::fMRIsigF * fsglm.c::GLMtest * randomfields.c::RFstat2PVal * gsl_cdf_flat_Q * randomfields.c::RFstat2PVal * gsl_cdf_gaussian_Q * randomfields.c::RFstat2PVal * gsl_cdf_tdist_Q * randomfields.c::RFstat2PVal * gsl_cdf_chisq_Q * randomfields.c::RFstat2PVal * gsl_cdf_flat_Qinv * randomfields.c::RFp2StatVal * gsl_cdf_gaussian_Qinv * randomfields.c::RFp2StatVal * gsl_cdf_tdist_Qinv * randomfields.c::RFp2StatVal * gsl_cdf_chisq_Qinv * randomfields.c::RFp2StatVal * gsl_linalg_SV_decomp * matrix.c::MatrixSVDPseudoInverse * gsl_linalg_cholesky_decomp * optseq2.c::AR1WhitenMatrix * gsl_rng_type * randomfields.h::RANDOM_FIELD_SPEC, RFS * randomfields.h::RFspecInit * randomfields.c::RFspecInit * gsl_rng_ranlux389 * randomfields.c::RFspecInit * gsl_rng * randomfields.h::RANDOM_FIELD_SPEC, RFS * gsl_rng_alloc * randomfields.c::RFspecInit * gsl_rng_free * randomfields.c::RFspecFree * gsl_rng_set * randomfields.c::RFspecSetSeed * gsl_ran_flat * randomfields.c::RFdrawVal * gsl_ran_gaussian * randomfields.c::RFdrawVal * gsl_ran_fdist * randomfields.c::RFdrawVal * gsl_ran_tdist * randomfields.c::RFdrawVal * gsl_ran_chisq * randomfields.c::RFdrawVal * gsl_ran_binomial_pdf * mri_cht2p.c::main * volcluster.c::CSDpvalClustSize |
GSL Replacement
GPL is bad and we're going to replace GSL.
Stub library located at: /usr/pubsw/packages/gsl/stub/include/
Files with GSL
- randomfields.h
- mri_cht2p.c
- mri_diff.c -- seems to only include gsl
- mri_glmfit.c -- seems to only include gsl
- mri_mcsim.c -- seems to only include gsl
- mri_stats2reg.c -- seems to only include gsl
- optseq2.c
- fmriutils.c
- fsglm.c
- matrix.c -- lots of matrix functionality that we can replace with vxl
- randomfields.c
- sig.c
- volcluster.c
GSL Types and Functions Used
- gsl_matrix
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixToGSL
- matrix.c::MatrixFromGSL
- matrix.c::MatrixSVDPseudoInverse
- gsl_matrix_alloc
- matrix.c::MatrixToGSL
- matrix.c::MatrixSVDPseudoInverse
- gsl_matrix_calloc
- optseq2.c::AR1WhitenMatrix
- gsl_matrix_free
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixSVDPseudoInverse
- gsl_matrix_get
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixFromGSL
- gsl_matrix_set
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixFromGSL
- gsl_vector
- matrix.c::MatrixSVDPseudoInverse
- matrix.c::VectorFromGSL
- gsl_vector_alloc
- matrix.c::MatrixSVDPseudoInverse
- gsl_vector_free
- matrix.c::MatrixSVDPseudoInverse
- gsl_vector_get
- matrix.c::VectorFromGSL
- gsl_vector_set -- not used
- gsl_cdf_fdist_Q
- fmriutils.c::fMRIsigF
- fsglm.c::GLMtest
- randomfields.c::RFstat2PVal
- gsl_cdf_flat_Q
- randomfields.c::RFstat2PVal
- gsl_cdf_gaussian_Q
- randomfields.c::RFstat2PVal
- gsl_cdf_tdist_Q
- randomfields.c::RFstat2PVal
- gsl_cdf_chisq_Q
- randomfields.c::RFstat2PVal
- gsl_cdf_flat_Qinv
- randomfields.c::RFp2StatVal
- gsl_cdf_gaussian_Qinv
- randomfields.c::RFp2StatVal
- gsl_cdf_tdist_Qinv
- randomfields.c::RFp2StatVal
- gsl_cdf_chisq_Qinv
- randomfields.c::RFp2StatVal
- gsl_linalg_SV_decomp
- matrix.c::MatrixSVDPseudoInverse
- gsl_linalg_cholesky_decomp
- optseq2.c::AR1WhitenMatrix
- gsl_rng_type
- randomfields.h::RANDOM_FIELD_SPEC, RFS
- randomfields.h::RFspecInit
- randomfields.c::RFspecInit
- gsl_rng_ranlux389
- randomfields.c::RFspecInit
- gsl_rng
- randomfields.h::RANDOM_FIELD_SPEC, RFS
- gsl_rng_alloc
- randomfields.c::RFspecInit
- gsl_rng_free
- randomfields.c::RFspecFree
- gsl_rng_set
- randomfields.c::RFspecSetSeed
- gsl_ran_flat
- randomfields.c::RFdrawVal
- gsl_ran_gaussian
- randomfields.c::RFdrawVal
- gsl_ran_fdist
- randomfields.c::RFdrawVal
- gsl_ran_tdist
- randomfields.c::RFdrawVal
- gsl_ran_chisq
- randomfields.c::RFdrawVal
- gsl_ran_binomial_pdf
- mri_cht2p.c::main
- volcluster.c::CSDpvalClustSize