GSL Replacement
GPL is bad and we're going to replace GSL.
Stub library located at: /usr/pubsw/packages/gsl/stub/include/
Files with GSL
- randomfields.h
- mri_cht2p.c
- mri_diff.c -- seems to only include gsl
- mri_glmfit.c -- seems to only include gsl
- mri_mcsim.c -- seems to only include gsl
- mri_stats2reg.c -- seems to only include gsl
- optseq2.c
- fmriutils.c
- fsglm.c
- matrix.c -- lots of matrix functionality that we can replace with vxl
- randomfields.c
- sig.c -- uses a gsl function if MGH_GSL is defined and it never is
- volcluster.c
GSL Function Stack Trace
- gsl_matrix
- matrix.c::MatrixToGSL
- matrix.c::MatrixSVDPseudoInverse
- gcamorph.c::gcamComputeOptimalTargetLinearTransform
- gcamorph.c::GCAMreinitWithLTA
- mri_ca_register.c::main
- gcamorph.c::GCAMreinitWithLTA
- gcamorph.c::gcamComputeOptimalTargetLinearTransform
- matrix.c::MatrixSVDPseudoInverse
- matrix.c::MatrixFromGSL
- matrix.c::MatrixSVDPseudoInverse
- ...
- matrix.c::MatrixSVDPseudoInverse
- matrix.c::MatrixToGSL
- gsl_matrix_alloc
- matrix.c::MatrixToGSL
- ...
- matrix.c::MatrixSVDPseudoInverse
- ...
- matrix.c::MatrixToGSL
GSL Types and Functions Used
- gsl_matrix
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixToGSL
- matrix.c::MatrixFromGSL
- matrix.c::MatrixSVDPseudoInverse
- gsl_matrix_alloc
- matrix.c::MatrixToGSL
- matrix.c::MatrixSVDPseudoInverse
- gsl_matrix_calloc
- optseq2.c::AR1WhitenMatrix
- gsl_matrix_free
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixSVDPseudoInverse
- gsl_matrix_get
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixFromGSL
- gsl_matrix_set
- optseq2.c::AR1WhitenMatrix
- matrix.c::MatrixFromGSL
- gsl_vector
- matrix.c::MatrixSVDPseudoInverse
- matrix.c::VectorFromGSL
- gsl_vector_alloc
- matrix.c::MatrixSVDPseudoInverse
- gsl_vector_free
- matrix.c::MatrixSVDPseudoInverse
- gsl_vector_get
- matrix.c::VectorFromGSL
- gsl_vector_set -- not used
- gsl_cdf_fdist_Q
- fmriutils.c::fMRIsigF
- fsglm.c::GLMtest
- randomfields.c::RFstat2PVal
- gsl_cdf_flat_Q
- randomfields.c::RFstat2PVal
- gsl_cdf_gaussian_Q
- randomfields.c::RFstat2PVal
- gsl_cdf_tdist_Q
- randomfields.c::RFstat2PVal
- sig.c::sigt -- only used if MGH_GSL is defined and it never is
- gsl_cdf_chisq_Q
- randomfields.c::RFstat2PVal
- gsl_cdf_flat_Qinv
- randomfields.c::RFp2StatVal
- gsl_cdf_gaussian_Qinv
- randomfields.c::RFp2StatVal
- gsl_cdf_tdist_Qinv
- randomfields.c::RFp2StatVal
- gsl_cdf_chisq_Qinv
- randomfields.c::RFp2StatVal
- gsl_linalg_SV_decomp
- matrix.c::MatrixSVDPseudoInverse
- gsl_linalg_cholesky_decomp
- optseq2.c::AR1WhitenMatrix
- gsl_rng_type
- randomfields.h::RANDOM_FIELD_SPEC, RFS
- randomfields.h::RFspecInit
- randomfields.c::RFspecInit
- gsl_rng_ranlux389
- randomfields.c::RFspecInit
- gsl_rng
- randomfields.h::RANDOM_FIELD_SPEC, RFS
- gsl_rng_alloc
- randomfields.c::RFspecInit
- gsl_rng_free
- randomfields.c::RFspecFree
- gsl_rng_set
- randomfields.c::RFspecSetSeed
- gsl_ran_flat
- randomfields.c::RFdrawVal
- gsl_ran_gaussian
- randomfields.c::RFdrawVal
- gsl_ran_fdist
- randomfields.c::RFdrawVal
- gsl_ran_tdist
- randomfields.c::RFdrawVal
- gsl_ran_chisq
- randomfields.c::RFdrawVal
- gsl_ran_binomial_pdf
- mri_cht2p.c::main
- volcluster.c::CSDpvalClustSize
Possible Replacements
- VXL/VNL for SV Decomposition
- ITK for some of the distribution functions?