= GrahamWideman pages =
== Useful pages ==
||<#D0D0D0>'''Link''' ||<#D0D0D0>'''Description''' ||
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||||<#D0D0D0 style="text-align:center">'''Concepts''' (articles by me) ||
||<style="vertical-align:top">ReconAllFilesVsSteps ||Cross-reference table showing files read and written by each step in recon-all ||
||<style="vertical-align:top">LabelsClutsAnnotationFiles ||Article on '''labels''', '''colortables''' and '''annotations''' ||
||<style="vertical-align:top">[[tksurfer_labeledit]] ||'''Editing labels/annotations''' in tksurfer ||
||<style="vertical-align:top">SurfaceRegAndTemplates ||Creating and using '''"tif" templates''' for spherical registration of surfaces ||
||<style="vertical-align:top">SurfaceLabelAtlas ||Creating and using '''GCA atlas files''' for parcellation ||
||<style="vertical-align:top">TemplateTifImageFiles ||Discussion of the contents and format of the so-called "Image" file format used to store  !FreeSurfer surface-registration template data. ||
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||||<#D0D0D0 style="text-align:center">'''Platform topics''' ||
||<style="vertical-align:top">LinuxBoxUbuntuMint2013Report ||Report on configuring 2013-era desktop hardware for Linux and FreeSurfer, using Mint 15 distribution. ||
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||||<#D0D0D0 style="text-align:center">'''Scripts''' ||
||<style="vertical-align:top">QaImageScripts ||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA ||
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||||<#D0D0D0 style="text-align:center">'''Programs/Scripts''' (... for which I wrote some documentation) ||
||<style="vertical-align:top">[[tksurfer]] ||Freesurfer's surface-viewing application. (I completed the list of flagged arguments.) ||
||<style="vertical-align:top">[[mris_curvature_stats]] ||Curvature-related statistics ||
||<style="vertical-align:top">[[mris_label2annot]] ||Combine label files plus colortable into an annotation file ||
||<style="vertical-align:top">[[mri_annotation2label]] ||Extract label file from annotation file ||
||<style="vertical-align:top">[[mris_make_template]] ||Use data from multiple subjects to create a surface registration template file ||
||<style="vertical-align:top">[[mri_make_template]] ||Use data from multiple subjects to create a volume registration template ||
||<style="vertical-align:top">[[mris_register]] ||For one subject, register to a registration template (usually resulting in ?h.sphere.reg) ||
||<style="vertical-align:top">[[mrisp_paint]] ||"Paint" data from a template file "onto a given surface". Allows viewing data from a template file. ||
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||||<#D0D0D0 style="text-align:center">'''Source code suggestions''' ||
||<style="vertical-align:top">[[gwcode_tksurfer_delink]] ||Code relating to -delink ||
||<style="vertical-align:top">[[gwcode_tksurfer_labelresize]] ||Code to allow the tool window's per-vertex data fields to expand on window resize ||
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||||<#D0D0D0 style="text-align:center">'''Issues''' ||
||<style="vertical-align:top">[[gwissue_labeledit]] ||Issues regarding the tksurfer functionality relating to creating and editing labels and annotations ||
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||||<#D0D0D0 style="text-align:center">'''Wiki''' ||
||<style="vertical-align:top">WikiInsertImage ||Distilled instructions on how to insert an image on a wiki page ||
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== Test Pages ==
 * GrahamWideman
 * GrahamWideman/MoinEditorBackup
 * GrahamWidemanTest01
 * GrahamWidemanTest02
 * GrahamWidemanTest03
 * GrWiAccessControlTest
 * GrWiTestNewPage
 * TitleIndexPage

== Reference Pages ==
 * SystemInfo
 * WikiConfig
 * WikiConfigHelp
 * GrahamWidemanTimeStamp