| Deletions are marked like this. | Additions are marked like this. |
| Line 22: | Line 22: |
| ||wm ||edits copied to long when long run from scratch; surfs for base and long unchanged ||affected long surfs|| || ||test edits in cross w/o removing long || | ||wm ||edits copied to long when long run from scratch; <<BR>>surfs for base and long unchanged ||affected long surfs|| || ||test edits in cross w/o removing long || |
| Line 25: | Line 25: |
| ||seed point, watershed ||can only adjust wsthresh for cross; edits copied to base ||n/a||n/a|| || || | ||seed point, watershed ||can only adjust wsthresh for cross; <<BR>>edits copied to base ||n/a||n/a|| || || |
| Line 30: | Line 30: |
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Done
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
X |
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brainmask |
|
X |
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wm |
X |
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aseg |
X |
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brainfinalsurfs |
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seed point, watershed |
X |
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cw256 |
X |
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talairach |
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xopts |
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seed point, fill & cut |
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Notes
* After editing the base (only wm.mgz edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully.
* After editing the cross-sectionals, it is ok to just run -autorecon2 without -autorecon3.
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
affected base surfs |
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|
|
|
brainmask |
|
affected long surfs |
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|
wm |
edits copied to long when long run from scratch; |
affected long surfs |
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|
test edits in cross w/o removing long |
aseg |
edits copied to long but changes are unpredictable |
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brainfinalsurfs |
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seed point, watershed |
can only adjust wsthresh for cross; |
n/a |
n/a |
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cw256 |
only have to use this flag once w/ recon-all for cross |
n/a |
n/a |
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talairach |
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xopts |
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|
seed point, fill & cut |
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