| Deletions are marked like this. | Additions are marked like this. |
| Line 5: | Line 5: |
| ||wm ||X || || || || || | ||wm ||X ||X|| || || || |
| Line 21: | Line 21: |
| ||brainmask ||did not affect the base and therefore did not affect the long ||affected long surfs || || ||*retesting* || | ||brainmask ||need to delete base and rerun from scratch in order for edits to work||affected long surfs || || || || |
Done
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
X |
|
|
|
|
brainmask |
X |
X |
|
|
|
wm |
X |
X |
|
|
|
aseg |
X |
|
|
|
|
brainfinalsurfs |
|
|
|
|
|
seed point, watershed |
X |
|
|
|
|
cw256 |
X |
|
|
|
|
talairach |
|
|
|
|
|
xopts |
|
|
|
|
|
seed point, fill & cut |
|
|
|
|
|
Notes
* After editing the base (for wm.mgz and CPs edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully.
* After editing the cross-sectionals, it is ok to just run -autorecon2 without -autorecon3.
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
affected base surf; |
|
|
|
|
brainmask |
need to delete base and rerun from scratch in order for edits to work |
affected long surfs |
|
|
|
wm |
edits copied to long when long run from scratch; |
affected long surfs |
|
|
test edits in cross w/o removing long |
aseg |
edits copied to long but changes are unpredictable |
|
|
|
|
brainfinalsurfs |
|
|
|
|
|
seed point, watershed |
can only adjust wsthresh for cross; |
n/a |
n/a |
|
|
cw256 |
only have to use this flag once w/ recon-all for cross |
n/a |
n/a |
|
|
talairach |
|
|
|
|
|
xopts |
|
|
|
|
|
seed point, fill & cut |
|
|
|
|
|