Done
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
X |
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brainmask |
|
X |
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wm |
X |
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aseg |
X |
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brainfinalsurfs |
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seed point, watershed |
X |
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cw256 |
X |
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talairach |
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xopts |
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seed point, fill & cut |
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Notes
* After editing the base (only wm.mgz edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully.
* After editing the cross-sectionals, it is ok to just run -autorecon2 without -autorecon3.
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
affected base surfs |
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brainmask |
|
affected long surfs |
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wm |
edits copied to long when long run from scratch; |
affected long surfs |
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test edits in cross w/o removing long |
aseg |
edits copied to long but changes are unpredictable |
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brainfinalsurfs |
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seed point, watershed |
can only adjust wsthresh for cross; |
n/a |
n/a |
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cw256 |
only have to use this flag once w/ recon-all for cross |
n/a |
n/a |
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talairach |
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|
xopts |
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seed point, fill & cut |
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