MNE Class Notes
These notes describe the setup of the laptops used for the MNE class. These notes complement the notes for the MultiModal course, which describes a course setup more generally.
CentOS config
- Centos 5 x86_64 SMP
named 'nmrclass<number>', where <number> is 7 - 18
- user account named 'nmrclass', default shell is tcsh, with the default password, create user this way:
useradd -d /home/nmrclass -s /bin/tcsh nmrclass
- the 'nmrclass' account .cshrc should contain this:
# exit if not an interactive shell
if ($?USER == 0 || $?prompt == 0) exit
alias dir "ls -alF"
# turn-off error beep
xset b off
#
# Freesurfer and FS-FAST
#
if ( -e /home/apps/freesurfer/SetUpFreeSurfer.csh ) then
setenv FREESURFER_HOME /home/apps/freesurfer
if ( -e /media/disk/buckner_data/tutorial_subjs ) then
setenv TUTORIAL_DATA /media/disk/buckner_data/tutorial_subjs
setenv SUBJECTS_DIR $TUTORIAL_DATA
endif
source $FREESURFER_HOME/SetUpFreeSurfer.csh
if ( -e /media/disk/fsfast-tutorial ) then
setenv FSFTUTDIR /media/disk/fsfast-tutorial
echo "FSFTUTDIR $FSFTUTDIR"
endif
endif
#
# MATLAB
#
if ( -e /home/apps/matlab/bin ) then
setenv PATH "/home/apps/matlab/bin":"$PATH"
endif
#
# MNE
#
if ( -e /media/disk/mne_sample_data ) then
setenv MNE_DATA /media/disk/mne_sample_data
echo ""
echo "MNE sample data:"
echo "MNE_DATA $MNE_DATA"
endif