## page was renamed from FsTutorial/MultiModalFmriIndividual/BbStats_tktools
## page was renamed from FsTutorial/MultiModalFmriIndividual/BbStats
'''<<TableOfContents>>'''
= ces.bb.stats =
{{{
# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
# cmdline mri_segstats --seg /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v6/mri/aparc+aseg.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.bb.stats
# sysname Linux
# hostname nmrclass33
# machine x86_64
# user nmrclass
# anatomy_type volume
#
# SegVolFile /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v6/mri/aparc+aseg.mgz
# SegVolFileTimeStamp 2017/02/08 11:13:38
# ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2017/01/18 17:00:02
# InVolFile ces.anat.bb.mgh
# InVolFileTimeStamp 2018/02/21 12:17:20
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
# TableCol 2 FieldName Segmentation Id
# TableCol 2 Units NA
# TableCol 3 ColHeader NVoxels
# TableCol 3 FieldName Number of Voxels
# TableCol 3 Units unitless
# TableCol 4 ColHeader Volume_mm3
# TableCol 4 FieldName Volume
# TableCol 4 Units mm^3
# TableCol 5 ColHeader StructName
# TableCol 5 FieldName Structure Name
# TableCol 5 Units NA
# TableCol 6 ColHeader Mean
# TableCol 6 FieldName Intensity Mean
# TableCol 6 Units unknown
# TableCol 7 ColHeader StdDev
# TableCol 7 FieldName Itensity StdDev
# TableCol 7 Units unknown
# TableCol 8 ColHeader Min
# TableCol 8 FieldName Intensity Min
# TableCol 8 Units unknown
# TableCol 9 ColHeader Max
# TableCol 9 FieldName Intensity Max
# TableCol 9 Units unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units unknown
# NRows 4
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
1 1021 2752 2752.0 ctx-lh-pericalcarine 107.7495 149.3924 -111.9001 713.9155 825.8157
2 1022 12433 12433.0 ctx-lh-postcentral 27.4394 78.9434 -232.6694 461.8479 694.5173
3 1030 14850 14850.0 ctx-lh-superiortemporal 30.1694 74.8432 -143.5521 461.8479 605.4000
4 17 4534 4534.0 Left-Hippocampus 2.0828 23.2831 -113.9432 131.5358 245.4790
}}}
= ces.abs-masked.bb.stats =
{{{
# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
# cmdline mri_segstats --seg /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v6/mri/aparc+aseg.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.abs-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign abs
# sysname Linux
# hostname nmrclass33
# machine x86_64
# user nmrclass
# anatomy_type volume
#
# SegVolFile /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v6/mri/aparc+aseg.mgz
# SegVolFileTimeStamp 2017/02/08 11:13:38
# ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2017/01/18 17:00:02
# MaskVolFile sig.anat.bb.mgh
# MaskVolFileTimeStamp 2018/02/21 13:09:26
# MaskThresh 2.000000
# MaskSign abs
# MaskFrame 0
# MaskInvert 0
# InVolFile ces.anat.bb.mgh
# InVolFileTimeStamp 2018/02/21 12:17:20
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
# TableCol 2 FieldName Segmentation Id
# TableCol 2 Units NA
# TableCol 3 ColHeader NVoxels
# TableCol 3 FieldName Number of Voxels
# TableCol 3 Units unitless
# TableCol 4 ColHeader Volume_mm3
# TableCol 4 FieldName Volume
# TableCol 4 Units mm^3
# TableCol 5 ColHeader StructName
# TableCol 5 FieldName Structure Name
# TableCol 5 Units NA
# TableCol 6 ColHeader Mean
# TableCol 6 FieldName Intensity Mean
# TableCol 6 Units unknown
# TableCol 7 ColHeader StdDev
# TableCol 7 FieldName Itensity StdDev
# TableCol 7 Units unknown
# TableCol 8 ColHeader Min
# TableCol 8 FieldName Intensity Min
# TableCol 8 Units unknown
# TableCol 9 ColHeader Max
# TableCol 9 FieldName Intensity Max
# TableCol 9 Units unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units unknown
# NRows 4
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
1 1021 1530 1530.0 ctx-lh-pericalcarine 182.5064 164.3479 -111.9001 713.9155 825.8157
2 1022 5935 5935.0 ctx-lh-postcentral 60.9178 100.7243 -232.6694 461.8479 694.5173
3 1030 5020 5020.0 ctx-lh-superiortemporal 89.1554 100.8434 -143.5521 461.8479 605.4000
4 17 136 136.0 Left-Hippocampus 24.2060 63.0450 -113.9432 131.5358 245.4790
}}}
= ces.pos-masked.bb.stats =
{{{
# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
# cmdline mri_segstats --seg /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v6/mri/aparc+aseg.mgz --ctab /home/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.pos-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign pos
# sysname Linux
# hostname nmrclass33
# machine x86_64
# user nmrclass
# anatomy_type volume
#
# SegVolFile /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-101.v6/mri/aparc+aseg.mgz
# SegVolFileTimeStamp 2017/02/08 11:13:38
# ColorTable /home/nmrclass/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2017/01/18 17:00:02
# MaskVolFile sig.anat.bb.mgh
# MaskVolFileTimeStamp 2018/02/21 13:13:42
# MaskThresh 2.000000
# MaskSign pos
# MaskFrame 0
# MaskInvert 0
# InVolFile ces.anat.bb.mgh
# InVolFileTimeStamp 2018/02/21 12:17:20
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol 1 ColHeader Index
# TableCol 1 FieldName Index
# TableCol 1 Units NA
# TableCol 2 ColHeader SegId
# TableCol 2 FieldName Segmentation Id
# TableCol 2 Units NA
# TableCol 3 ColHeader NVoxels
# TableCol 3 FieldName Number of Voxels
# TableCol 3 Units unitless
# TableCol 4 ColHeader Volume_mm3
# TableCol 4 FieldName Volume
# TableCol 4 Units mm^3
# TableCol 5 ColHeader StructName
# TableCol 5 FieldName Structure Name
# TableCol 5 Units NA
# TableCol 6 ColHeader Mean
# TableCol 6 FieldName Intensity Mean
# TableCol 6 Units unknown
# TableCol 7 ColHeader StdDev
# TableCol 7 FieldName Itensity StdDev
# TableCol 7 Units unknown
# TableCol 8 ColHeader Min
# TableCol 8 FieldName Intensity Min
# TableCol 8 Units unknown
# TableCol 9 ColHeader Max
# TableCol 9 FieldName Intensity Max
# TableCol 9 Units unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units unknown
# NRows 4
# NTableCols 10
# ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
1 1021 1422 1422.0 ctx-lh-pericalcarine 200.5127 156.3413 32.1526 713.9155 681.7629
2 1022 4340 4340.0 ctx-lh-postcentral 107.5646 72.6399 19.5321 461.8479 442.3158
3 1030 4300 4300.0 ctx-lh-superiortemporal 112.4998 89.1221 25.4251 461.8479 436.4228
4 17 77 77.0 Left-Hippocampus 75.2143 28.8035 43.2457 131.5358 88.2900
}}}
= ces.pos-masked.vol.stats =
{{{
Measure:volume ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 1424.0 4339.0 4283.0 79.0
1 1246.0 4780.0 4049.0 186.0
2 609.0 4057.0 2990.0 121.0
3 843.0 2928.0 2236.0 146.0
4 1614.0 4003.0 3873.0 232.0
}}}
= ces.abs-masked.mean.stats =
{{{
Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 180.1391 60.8179 88.2699 26.6048
1 162.6065 70.9748 78.5134 -1.1652
2 264.1356 38.3964 73.2994 -42.7581
3 182.7722 74.2692 97.7955 31.554
4 118.7494 57.6731 96.149 10.9517
}}}
= ces.pos-masked.mean.stats =
{{{
Measure:mean ctx-lh-pericalcarine ctx-lh-postcentral ctx-lh-superiortemporal Left-Hippocampus
0 198.5072 107.5108 111.8215 75.6666
1 232.2992 108.0577 121.9527 37.9277
2 336.5665 111.2593 136.4619 81.3814
3 196.1099 81.4932 127.5857 77.9514
4 120.5139 91.797 113.7618 39.2072
}}}