Results 1 - 25 of 28 results out of about 3675 pages. (5.28 seconds)
- Publications . . . 131 matches
- ...ntation and Surface Reconstruction]], Dale, A.M., Fischl, B., Sereno, M.I., (1999). !NeuroImage 9(2):179-194
* [[https://surfer.nmr.mgh.harvard.edu/ftp/articles/fischl99b-recon2.p...
- SubregionSegmentation . . . 9 matches
- ... Van Leemput, K., Greve, D., van der Kouwe, A., Caballero-Gaudes, C., Paz-Alonso, P. Neuroimage (accepted).
* Hippocampus: [[http://www.nmr.mgh.harvard.edu/~iglesias/pdf/subfield...
- LongitudinalProcessing . . . 8 matches
- ...Registration: A Robust Approach,'''''<<BR>>
M. Reuter, H.D. Rosas, B. Fischl.<<BR>>
!NeuroImage 53(4), pp. 1181-1196, 2010.
http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 <<B...
- FreeSurferAnalysisPipelineOverview . . . 6 matches
- ..., M.I., Cortical Surface-Based Analysis I: Segmentation and Surface Reconstruction. NeuroImage 9(2):179-194. 1999.
* Fischl, B.R., Sereno, M.I., Dale, A. M. Cortical Surface-Base...
- sbTIV . . . 4 matches
- ...tion against manual measurement of total intracranial volume]] Buckner et al. (2004) NeuroImage 23:724-738.
However, etiv is not obtained via direct segmentation of all structures...
- LongitudinalProcessing45 . . . 4 matches
- ...nverse Consistent Registration: A Robust Approach,
M. Reuter, H.D. Rosas, B. Fischl. NeuroImage 53 (4), pp. 1181-1196, 2010.
http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 <<...
- infantFS . . . 3 matches
- ... surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years, NeuroImage, 2020, 116946, https://doi.org/10.1016/j.neuroimage.2020.116946. (http://www.science...
- ScLimbic . . . 3 matches
- ...opes, A, Hoffmann, M, Dalca, A, Fischl, B, Iglesias, JE, Augustinack, JC. Accepted. Neuroimage 2021. 10.1016/j.neuroimage.2021.118610. PMID: 34571161.]] https://pubmed.ncbi.nlm.ni...
- Samseg . . . 3 matches
- ...tion using parametric Bayesian modeling]]. O. Puonti, J.E. Iglesias, K. Van Leemput. NeuroImage, 143, 235-249, 2016.
* MS lesions: [[http://nmr.mgh.harvard.edu/~koen/CerriNI2021....
- BrainstemSubstructures . . . 3 matches
- ...s in your analysis, please cite:
* [[http://www.nmr.mgh.harvard.edu/~iglesias/pdf/Neuroimage_2015_brainstem.pdf|Bayesian segmentation of brainstem structures in MRI]]. Iglesias,...
- recon-all . . . 2 matches
- ...(1999). Cortical Surface-Based Analysis I: Segmentation and Surface Reconstruction. NeuroImage 9(2):179-194
[3] Fischl, B.R., Sereno, M.I.,Dale, A. M. (1999) Cortical Surface-Ba...
- ThalamicNucleiDTI . . . 2 matches
- ...f you use these tools in your analysis, please cite:
* [[https://doi.org/10.1016/j.neuroimage.2023.120129|Accurate Bayesian segmentation of thalamic nuclei using diffusion MRI an...
- Orientation . . . 2 matches
- ...I fluctuation amplitudes on cerebral cortical orientation relative to the direction of B0 and anatomical axes''. NeuroImage 2019; 196:337--350; DOI:10.1016/j.neuroimage.2019.04.036...
- GradUnwarp . . . 2 matches
- ...MRI Studies: Effects of Gradient Non-linearity Correction on Phantom and Human Data. NeuroImage NeuroImage (Apr 1;30(2):436-43, 2006)
Outline of steps involved:
1. Obtain from...
- BrodmannAreaMaps . . . 2 matches
- ...G. Wiggins, L.L. Wald, H.D. Rosas, A. Potthast, E.L. Schwartz and B. Fischl (2007). NeuroImage 2007.10.033.
* Quantitative analysis of cyto- and receptor architecture of the huma...
- mri_normalize . . . 1 match
- ...egmentation and Surface Reconstruction", Dale, A.M., Fischl, B., Sereno, M.I. (1999) NeuroImage 9(2):179-194
= Reporting Bugs =
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
...
- mri_cvs_register . . . 1 match
- ...Improved Tractography Alignment Using Combined Volumetric and Surface Registration", NeuroImage 51 (2010), 206-213
= Reporting Bugs =
Report bugs to < analysis-bugs@nmr.mgh.harvar...
- mri_concat . . . 1 match
- ... -2.1 and +3.4 --> -2.1
= Reference =
Nichols, Brett, Andersson, Wager, and Poline
NeuroImage, Volume 25, Issue 3, 15 April 2005, 653-660
= Reporting Bugs =
Report bugs to frees...
- eTIV . . . 1 match
- ...tion against manual measurement of total intracranial volume]] Buckner et al. (2004) NeuroImage 23:724-738.
Basically, total intracranial volume is found to correlate with the det...
- V1 . . . 1 match
- ...G. Wiggins, L.L. Wald, H.D. Rosas, A. Potthast, E.L. Schwartz and B. Fischl (2008). NeuroImage 39:1585-1599.
To create these label:
{{{
recon-all -s subjid -label-v1
}}}
This wi...
- SurfaceLabelAtlas . . . 1 match
- ...uckner, A.M. Dale, R.P. Maguire, B.T. Hyman, M.S. Albert, and R.J. Killiany, (2006). NeuroImage 31(3):968-80.
See: ArticlesSlidesAndPosters
= Document Author(s) =
Graham Wideman ...
- FsTutorial/VisualizingAndPlotting . . . 1 match
- ...in Functional Neuroimaging Using the False Discovery Rate. Genovese, Lazar, Nichols. NeuroImage 15:870-878, 2002.
FDR is built directly into the tksurfer interface. To use it, cho...
- FsTutorial/Visualization . . . 1 match
- ...in Functional Neuroimaging Using the False Discovery Rate. Genovese, Lazar, Nichols. NeuroImage 15:870-878, 2002.
FDR is built directly into the tksurfer interface. To use it, cho...
- FsTutorial/GcaFormat . . . 1 match
- ..., Salat, D.H., van der Kouwe, A.J.W., Makris, N., Ségonne, F., and Dale, A.M. (2004) NeuroImage 23:S69-S84.
* [[https://surfer.nmr.mgh.harvard.edu/ftp/articles/AtlasSeg_TMI2007Apr...
- CrossSequence . . . 1 match
- ...ucture registration, as a resort to improve the robustness of the registration method. The 1997 NeuroImage paper by Ashburner et al is a good reference for such type of approaches....