| Deletions are marked like this. | Additions are marked like this. |
| Line 3: | Line 3: |
| =Changes to recon-all= | = Changes to recon-all = |
| Line 8: | Line 8: |
|
== Old recon-all vs new recon-all == *the old flags (-stage1, -stage2, -stage3, -stage4a, -stage4b) will no longer be accepted by recon-all. Instead use the new set of flags (-autorecon1, -autorecon2, -autorecon3, etc.) *the new recon-all will not accept COR format, only .mgz files. (this is only for NEW data being processed, see section below for re-running previously processed data) *the new recon-all will accept |
Changes to recon-all
To all local NMR-center users, the development version of recon-all will be changed (INSERT DAY/TIME/ETC HERE) in preparation for the new stable release of FreeSurfer, coming on Feb. 1st. This message is to outline the significant changes to the script so that the switch may be as easy as possible. A copy of this message is posted on the wiki, here: https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllChanges BR BR
Old recon-all vs new recon-all
- the old flags (-stage1, -stage2, -stage3, -stage4a, -stage4b) will no longer be accepted by recon-all. Instead use the new set of flags (-autorecon1, -autorecon2, -autorecon3, etc.)
- the new recon-all will not accept COR format, only .mgz files. (this is only for NEW data being processed, see section below for re-running previously processed data)
- the new recon-all will accept