Results 1 - 14 of 14 results out of about 3685 pages. (0.93 seconds)
- recon-all . . . 2 matches
- ...'''recon-all''' (See also ReconAllDevTable, OtherUsefulFlags and [[http://grahamwideman.com/gw/brain/fs/fsunderstanding2006/processvsdata2006.htm|ProcessVsFilesTable]])
'''Index''...
- ReconAllChanges . . . 2 matches
- ...ad use the new set of flags (-autorecon1, -autorecon2, -autorecon3, etc.) See the ReconAllDevTable for a list of flags.
*the new recon-all will not accept COR format, only .mgz f...
- RecommendedReconstruction . . . 2 matches
- ...h and the skullstrip) which can save both time and use of computer power. See the ReconAllDevTable for a list of all the steps associated with each recon stage, or ReconAllBlockDia...
- FreeSurferVersion3 . . . 2 matches
- ...d labeling of the brain volume and this is included in the stable v3.0 release, [[ReconAllDevTable|during the -autorecon2 stage]]. However, if you processed your anatomical data u...
- TestPlan . . . 1 match
- ...im of these tests is simple: the output files produced by the recon-all stream ([[ReconAllDevTable|as documented here]]) must be 'correct'''', relative to reference files which are...
- SubcorticalSegmentation . . . 1 match
- ...em, Cerebrospinal Fluid
FreeSurfer runs automated labeling of the brain volume [[ReconAllDevTable|during the -autorecon2 stage]].
The automatic subcortical segmentation can tak...
- ReconAllTableStableV5 . . . 1 match
- ...s Flow ==
This table shows the recon-all steps for version 5.0 of FreeSurfer. See ReconAllDevTable for the most current development-code process flow.
Click [[ReconAllBlockDiagram...
- ReconAllTable . . . 1 match
- ...ectory from which the command is being run.
Here is a list of tables we have:
* ReconAllDevTable - this table is updated as changes are made during ongoing development of !FreeSu...
- ReconAllStableTablev4 . . . 1 match
- ...on-all steps for the latest '''stable''' version of FreeSurfer, '''v4.0.2'''. See ReconAllDevTable for the dev version of FreeSurfer.
Click [[ReconAllBlockDiagram|here]] to see th...
- OtherUsefulFlags . . . 1 match
- ...
== FreeSurfer Tutorial: Useful recon-all flags. ==
This page extends ReconAllDevTable.
The following flags can be used in conjunction with individual steps or the entire proces...
- FsTutorial/TroubleshootingDataV6.0 . . . 1 match
- ...tly used commands. Greater detail is provided the [[ReconAllTableStableV6.0]] and ReconAllDevTable.
----
=== Frequently used commands ===
The following commands depend on the edit...
- FsTutorial/TroubleshootingDataTESTING . . . 1 match
- ...49"}} <<BR>><<BR>> Greater detail is provided the [[ReconAllTableStableV5.3]] and ReconAllDevTable.
----
=== Frequently used commands ===
The following commands depend on the edit...
- FsTutorial/TroubleshootingData . . . 1 match
- ...49"}} <<BR>><<BR>> Greater detail is provided the [[ReconAllTableStableV5.3]] and ReconAllDevTable.
----
=== Frequently used commands ===
The following commands depend on the edit...
- FsTutorial/MorphAndRecon . . . 1 match
- ...ction of the wiki. For a listing of the individual flags used with recon-all see ReconAllDevTable and OtherUsefulFlags.
=== 3.0 Volume Processing: a detailed look ===
'''3.1 Cr...