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Size: 1572
Comment: recon-all runtime comparison
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Size: 3074
Comment:
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| == recon-all runtime comparison == | = recon-all -s bert -all runtime comparison = |
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| == platform comparison == ||||||'''CPU'''||'''RAM'''||'''HD'''||'''OS'''||'''Freesurfer build-stamp'''||'''runtime'''|| ||'''model'''||'''chipset'''||'''freq'''|| || || || || || ||AMD Opteron|| || || || || || || || ||2x Intel Xeon X5355||Intel 5000V||2.66 GHz||16GB||SATA|| || freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.1 ||20.5h || ||2x Intel Xeon E5310||Intel 5000P||1.6 GHz||4GB||SATA || || freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.1||30 h || ||2x Intel Xeon 5150||Intel 5000P||2.66GHz||7GB||SATA || || freesurfer-Darwin-tiger-i686-stable-pub-v4.0.1-full.dmg||24.25 h || ||2x Intel Xeon 5050||Intel 5000V||3GHz||8GB||SATA|| || freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.0||36.8 h|| ||2x Intel Xeon E5320 || ||1.86 GHz ||12GB || SATA||Ubuntu 7.10|| freesurfer-Linux-rh9-stable-pub-v4.0.1-full.tar.gz ||29.5 || ||2x Intel Xeon || ||2.8GHz ||4GB ||SATA ||Centos 4.5 ||freesurfer-Linux-centos4-stable-pub-v4.0.2 ||35.25h || ||2x PowerPC G5|| ||2.7GHz ||8GB || ||Mac OS X 10.5 || freesurfer-Darwin-tiger-stable-pub-v4.0.2-full.dmg||47h || || || || || || || || || || || || || || || || || || || || || || || || || || || || == breakdown == |
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| || -motioncor || < 5 min || || || -nuintensitycor || 3 min || || || -talairach || 1 min || || || -normalization || 3 min || || || -skullstrip || 1 min || || || -gcareg || 8 min || || || -canorm || 1 min || || || -careg || 10 hours || || || -rmneck || 3 min || || || -skull-lta || 9 min || || || -calabel || 30 min || || || -normalization2 || 3 min || || || -segmentation || 4 min || || || -fill || 1 min || || |
|| -motioncor || < 5 min || 10 min || || -nuintensitycor || 3 min || 1 min || || -talairach || 1 min || 2 min || || -normalization || 5 min || 5 min || || -skullstrip || 2 min || 30 min || || -gcareg || 8 min || 16 min || || -canorm || 1 min || 3 min || || -careg || 10 hours || 11 hours || || -rmneck || 3 min || 3 min || || -skull-lta || 9 min || 22 min || || -calabel || 30 min || 8 hours || || -normalization2 || 3 min || 6 min || || -segmentation || 4 min || 4 min || || -fill || 1 min || 2 min || |
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| || -tessellate || < 1 min || || || -smooth1 || < 1 min || || || -inflate1 || 1 min || || || -qsphere || 16 min || || || -fix || 1-9 hours || || || -finalsurfs || 1-2 hours || || || -smooth2 || < 1 min || || || -inflate2 || 2 min || || || -cortribbon || < 1 min || || || -sphere || 1-2 hours || || || -surfreg || 1 hour || || || -contrasurfreg || 1 hour || || || -avgcurv || < 1 min || || || -cortparc || 1 min || || || -parcstats || < 1 min || || || -cortparc2 || 1 min || || || -parcstats2 || < 1 min || || || -aparc2aseg || 1 min || || || -all || 20-40 hours || 48 hours || |
|| -tessellate || < 1 min || 2 min || || -smooth1 || < 1 min || < 1 min || || -inflate1 || 1 min || 2 min || || -qsphere || 16 min || 22 min || || -fix || 1-2 hours || 1 hour || || -finalsurfs || 1-2 hours || 2 hours || || -smooth2 || < 1 min || 1 min || || -inflate2 || 2 min || 2 min || || -cortribbon || < 1 min || 3 min || || -sphere || 1-2 hours || 2-4 hours || || -surfreg || 1 hour || 5 hours || || -contrasurfreg || 1 hour || - || || -avgcurv || < 1 min || 1 min || || -cortparc || 1 min || 1 min || || -parcstats || < 1 min || 1 min || || -cortparc2 || 1 min || 1 min || || -parcstats2 || < 1 min || 1 min || both hemispheres: || -volmask || || 30 min || || -aparc2aseg || 1 min || 12 min || || -wmparc || || 1 hour || || -all || 26 hours || 48 hours || |
recon-all -s bert -all runtime comparison
platform comparison
CPU |
RAM |
HD |
OS |
Freesurfer build-stamp |
runtime |
||
model |
chipset |
freq |
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AMD Opteron |
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2x Intel Xeon X5355 |
Intel 5000V |
2.66 GHz |
16GB |
SATA |
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freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.1 |
20.5h |
2x Intel Xeon E5310 |
Intel 5000P |
1.6 GHz |
4GB |
SATA |
|
freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.1 |
30 h |
2x Intel Xeon 5150 |
Intel 5000P |
2.66GHz |
7GB |
SATA |
|
freesurfer-Darwin-tiger-i686-stable-pub-v4.0.1-full.dmg |
24.25 h |
2x Intel Xeon 5050 |
Intel 5000V |
3GHz |
8GB |
SATA |
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freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.0 |
36.8 h |
2x Intel Xeon E5320 |
|
1.86 GHz |
12GB |
SATA |
Ubuntu 7.10 |
freesurfer-Linux-rh9-stable-pub-v4.0.1-full.tar.gz |
29.5 |
2x Intel Xeon |
|
2.8GHz |
4GB |
SATA |
Centos 4.5 |
freesurfer-Linux-centos4-stable-pub-v4.0.2 |
35.25h |
2x PowerPC G5 |
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2.7GHz |
8GB |
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Mac OS X 10.5 |
freesurfer-Darwin-tiger-stable-pub-v4.0.2-full.dmg |
47h |
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breakdown
v3.0.5 run on AMD Opteron 64bit 2.5GHz processor
v4.0.1 run on Intel Xeon 3.0GHz processor
stage |
v3.0.5 |
v4.0.1 |
-motioncor |
< 5 min |
10 min |
-nuintensitycor |
3 min |
1 min |
-talairach |
1 min |
2 min |
-normalization |
5 min |
5 min |
-skullstrip |
2 min |
30 min |
-gcareg |
8 min |
16 min |
-canorm |
1 min |
3 min |
-careg |
10 hours |
11 hours |
-rmneck |
3 min |
3 min |
-skull-lta |
9 min |
22 min |
-calabel |
30 min |
8 hours |
-normalization2 |
3 min |
6 min |
-segmentation |
4 min |
4 min |
-fill |
1 min |
2 min |
per hemisphere:
-tessellate |
< 1 min |
2 min |
-smooth1 |
< 1 min |
< 1 min |
-inflate1 |
1 min |
2 min |
-qsphere |
16 min |
22 min |
-fix |
1-2 hours |
1 hour |
-finalsurfs |
1-2 hours |
2 hours |
-smooth2 |
< 1 min |
1 min |
-inflate2 |
2 min |
2 min |
-cortribbon |
< 1 min |
3 min |
-sphere |
1-2 hours |
2-4 hours |
-surfreg |
1 hour |
5 hours |
-contrasurfreg |
1 hour |
- |
-avgcurv |
< 1 min |
1 min |
-cortparc |
1 min |
1 min |
-parcstats |
< 1 min |
1 min |
-cortparc2 |
1 min |
1 min |
-parcstats2 |
< 1 min |
1 min |
both hemispheres:
-volmask |
|
30 min |
-aparc2aseg |
1 min |
12 min |
-wmparc |
|
1 hour |
-all |
26 hours |
48 hours |