| Deletions are marked like this. | Additions are marked like this. |
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| == recon-all runtime comparison == | == recon-all -s bert -all runtime comparison == |
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| Line 7: | Line 8: |
|
|| -motioncor || < 5 min || || || -nuintensitycor || 3 min || || || -talairach || 1 min || || || -normalization || 3 min || || || -skullstrip || 1 min || || || -gcareg || 8 min || || || -canorm || 1 min || || || -careg || 10 hours || || || -rmneck || 3 min || || || -skull-lta || 9 min || || || -calabel || 30 min || || || -normalization2 || 3 min || || || -segmentation || 4 min || || || -fill || 1 min || || |
|| -motioncor || < 5 min || 10 min || || -nuintensitycor || 3 min || 1 min || || -talairach || 1 min || 2 min || || -normalization || 5 min || 5 min || || -skullstrip || 2 min || 30 min || || -gcareg || 8 min || 16 min || || -canorm || 1 min || 3 min || || -careg || 10 hours || 11 hours || || -rmneck || 3 min || 3 min || || -skull-lta || 9 min || 22 min || || -calabel || 30 min || 8 hours || || -normalization2 || 3 min || 6 min || || -segmentation || 4 min || 4 min || || -fill || 1 min || 2 min || |
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|| -tessellate || < 1 min || || || -smooth1 || < 1 min || || || -inflate1 || 1 min || || || -qsphere || 16 min || || || -fix || 1-9 hours || || || -finalsurfs || 1-2 hours || || || -smooth2 || < 1 min || || || -inflate2 || 2 min || || || -cortribbon || < 1 min || || || -sphere || 1-2 hours || || || -surfreg || 1 hour || || || -contrasurfreg || 1 hour || || || -avgcurv || < 1 min || || || -cortparc || 1 min || || || -parcstats || < 1 min || || || -cortparc2 || 1 min || || || -parcstats2 || < 1 min || || |
|| -tessellate || < 1 min || 2 min || || -smooth1 || < 1 min || < 1 min || || -inflate1 || 1 min || 2 min || || -qsphere || 16 min || 22 min || || -fix || 1-2 hours || 1 hour || || -finalsurfs || 1-2 hours || 2 hours || || -smooth2 || < 1 min || 1 min || || -inflate2 || 2 min || 2 min || || -cortribbon || < 1 min || 3 min || || -sphere || 1-2 hours || 2-4 hours || || -surfreg || 1 hour || 5 hours || || -contrasurfreg || 1 hour || - || || -avgcurv || < 1 min || 1 min || || -cortparc || 1 min || 1 min || || -parcstats || < 1 min || 1 min || || -cortparc2 || 1 min || 1 min || || -parcstats2 || < 1 min || 1 min || |
| Line 40: | Line 41: |
| || -aparc2aseg || 1 min || || | || -volmask || || 30 min |
| Line 42: | Line 43: |
| || -all || 20-40 hours || 48 hours || |
|| -aparc2aseg || 1 min || 12 min || || -wmparc || || 1 hour || || -all || 26 hours || 48 hours || |
recon-all -s bert -all runtime comparison
v3.0.5 run on AMD Opteron 64bit 2.5GHz processor
v4.0.1 run on Intel Xeon 3.0GHz processor
stage |
v3.0.5 |
v4.0.1 |
-motioncor |
< 5 min |
10 min |
-nuintensitycor |
3 min |
1 min |
-talairach |
1 min |
2 min |
-normalization |
5 min |
5 min |
-skullstrip |
2 min |
30 min |
-gcareg |
8 min |
16 min |
-canorm |
1 min |
3 min |
-careg |
10 hours |
11 hours |
-rmneck |
3 min |
3 min |
-skull-lta |
9 min |
22 min |
-calabel |
30 min |
8 hours |
-normalization2 |
3 min |
6 min |
-segmentation |
4 min |
4 min |
-fill |
1 min |
2 min |
per hemisphere:
-tessellate |
< 1 min |
2 min |
-smooth1 |
< 1 min |
< 1 min |
-inflate1 |
1 min |
2 min |
-qsphere |
16 min |
22 min |
-fix |
1-2 hours |
1 hour |
-finalsurfs |
1-2 hours |
2 hours |
-smooth2 |
< 1 min |
1 min |
-inflate2 |
2 min |
2 min |
-cortribbon |
< 1 min |
3 min |
-sphere |
1-2 hours |
2-4 hours |
-surfreg |
1 hour |
5 hours |
-contrasurfreg |
1 hour |
- |
-avgcurv |
< 1 min |
1 min |
-cortparc |
1 min |
1 min |
-parcstats |
< 1 min |
1 min |
-cortparc2 |
1 min |
1 min |
-parcstats2 |
< 1 min |
1 min |
|| -volmask || || 30 min
-aparc2aseg |
1 min |
12 min |
-wmparc |
|
1 hour |
-all |
26 hours |
48 hours |