Diff for "ScubaFeatureComparison"

Differences between revisions 2 and 3

Feature	tkmedit	scuba
Volume
Number of volumes	2 anatomical, 2 segmentation, 1 functional	unlimited
Transparency	Segmentation or functional onto anatomical only	yes
Transforms
Disable internal RAS transform	yes	yes
Use external display transform	yes	yes
Use external registration file	Functional only	yes
Grayscale / Anatomical
Brightness / contrast	yes	yes
Levin / Window	no	yes
Min / max visible	yes	yes
Configurable with mouse dragging	yes	yes
Multiple interpolation types	Nearest, Trilinear, Sinc	Nearest, Trilinear, Sinc
Maximum Intensity Projection	yes	no
Mask to functional overlay	yes	no
Heat scale / Functional
Multiple time point / condition parsing	yes	no
Sign truncation	yes	no
Reverse sign	yes	no
In grayscale	yes	no
Multiple interpolation types	Nearest, Trilinear	Nearest, Trilinear, Sinc
Linear thresholds	yes	yes
Piecewise thresholds	yes	no
Use FDR to set threshold	yes	no
Mask to anatomical volume	yes	no
Lookup Table / Segmentation
Change LUT during run time	no	yes
Show Label Volume Count	yes	no
Brushing
Target multiple volumes	Main and Aux	no
Single voxel brush size	yes	yes
Circular and square brushes	yes	yes
Size based radius	yes	yes
Voxel based radius	yes	yes
3D brush	yes	yes
Threshold based editing	yes	no
Clone brush	yes	no
When editing LUT volume, shows structure names	yes	yes
Only brush 0 values	no	yes
Custom list of LUT values	no	yes
Show edited voxels	yes	no
Edited voxel value buffer	yes	no
Straight line drawing	no	yes
Filling
3D filling	yes	yes
Variable fuzziness	yes	yes
Seed based fuzziness	yes	yes
Gradient based fuzziness	no	yes
Max distance	yes	yes
Draw paths to limit filling	no	yes
Can stop at other ROIs	no	yes
Only fill 0 values	no	yes
Choose source volume	yes	yes
Operations
Threshold volume	yes	no
Flip volume	yes	no
Rotate volume	yes	no
Smart cut	yes	no

ROI / Labels
Brushing
Draw labels on volumes	yes	yes
Straight line drawing	yes	yes
Filling
3D filling	yes	yes
Variable fuzziness	yes	yes
Seed based fuzziness	yes	yes
Gradient based fuzziness	no	yes
Max distance	yes	yes
Draw paths to limit filling	no	yes
Can stop at other ROIs	no	yes
Only fill 0 values	no	yes
Choose source volume	yes	yes
Select by functional overlay values	yes	no

Surface
Overlay surface intersections onto slices	yes	yes
Intersection display	interpolated or projected	interpolated
Number of simultaneous surfaces	2 surface groups	unlimited
Automatically looks for and loads subject's surfaces	yes	no
Show nearest vertex to cursor	yes	yes
Show nearest edge to surface	yes	no
Jump to a vertex by number	yes	yes
Write distance values to vertex	yes	no
Write MRI value to vertex	yes	no
Change line color	yes	yes
Change vertex color	no	yes
Change line thickness	yes	yes
Color surface with annotation values	yes	no

Control Points
Control points work for non-comformed volumes	no	yes
Time Course
Graph time course values	yes	no
Graph average of ROI	yes	no
Save graph to text file	yes	no
Save graph to Postscript file	yes	no

DTI Overlay	yes	no
Head Point Overlay	yes	no
GCA	yes	no
GDF	yes	no
Multiple viewing panes
2x2 view	yes	yes
1x3 view	no	yes
Mosaic mode	yes	no

Show volume index coords	yes	yes
Show volume value	yes	yes
Show volume value as segmentation label	yes	yes
Show RAS coords	yes (scanner)	yes
Show TkReg RAS coords	yes	no
Show Talariach coords	yes	no
Save and load cursor	yes	yes
Import surface annotation as segmentation	yes	no
Histogram Fill	no	yes
Data Collection Info Window	no	yes
Segementation Volume Report	no	yes
ROI Stats Window	no	yes
Volume ROI Intensity Chart	no	yes
Paths	no	yes
Scene Setup Script	no	yes
Save TIFF screen shot	yes	yes
Save RGB screen shot	yes	no

-Deletions are marked like this.
+Additions are marked like this.
 Line 2:
-|||||| ''Volume''||

||   Number of volumes || 2 anatomical, 2 segmentation, 1 functional || unlimited ||

||   Transparency || Segmentation or functional onto anatomical only || yes ||
+|||||| '''Volume'''||

||   '''Number of volumes''' || 2 anatomical, 2 segmentation, 1 functional || unlimited ||

||   '''Transparency''' || Segmentation or functional onto anatomical only || yes ||
 Line 6:
-||     Disable internal RAS transform || yes || yes ||

||     Use external display transform || yes || yes ||

||     Use external registration file || Functional only || yes ||
+||     '''Disable internal RAS transform''' || yes || yes ||

||     '''Use external display transform''' || yes || yes ||

||     '''Use external registration file''' || Functional only || yes ||
 Line 10:
-||     Brightness / contrast || yes || yes ||

||     Levin / Window || no || yes ||

||     Min / max visible || yes || yes ||

||     Configurable with mouse dragging || yes || yes ||

||     Multiple interpolation types || Nearest, Trilinear, Sinc || Nearest, Trilinear, Sinc ||

||     Maximum Intensity Projection || yes || no ||

||     Mask to functional overlay || yes || no ||
+||     '''Brightness / contrast''' || yes || yes ||

||     '''Levin / Window''' || no || yes ||

||     '''Min / max visible''' || yes || yes ||

||     '''Configurable with mouse dragging''' || yes || yes ||

||     '''Multiple interpolation types''' || Nearest, Trilinear, Sinc || Nearest, Trilinear, Sinc ||

||     '''Maximum Intensity Projection''' || yes || no ||

||     '''Mask to functional overlay''' || yes || no ||
 Line 18:
-||     Multiple time point / condition parsing || yes || no ||

||     Sign truncation || yes || no ||

||     Reverse sign || yes || no ||

||     In grayscale || yes || no ||

||     Multiple interpolation types || Nearest, Trilinear || Nearest, Trilinear, Sinc ||

||     Linear thresholds || yes || yes ||

||     Piecewise thresholds || yes || no ||

||     Use FDR to set threshold || yes || no ||

||     Mask to anatomical volume || yes || no ||
+||     '''Multiple time point / condition parsing''' || yes || no ||

||     '''Sign truncation''' || yes || no ||

||     '''Reverse sign''' || yes || no ||

||     '''In grayscale''' || yes || no ||

||     '''Multiple interpolation types''' || Nearest, Trilinear || Nearest, Trilinear, Sinc ||

||     '''Linear thresholds''' || yes || yes ||

||     '''Piecewise thresholds''' || yes || no ||

||     '''Use FDR to set threshold''' || yes || no ||

||     '''Mask to anatomical volume''' || yes || no ||
 Line 28:
-||     Change LUT during run time || no || yes ||

||     Show Label Volume Count || yes || no ||
+||     '''Change LUT during run time''' || no || yes ||

||     '''Show Label Volume Count''' || yes || no ||
 Line 31:
-||     Target multiple volumes || Main and Aux || no ||

||     Single voxel brush size || yes || yes ||

||     Circular and square brushes || yes || yes ||

||     Size based radius || yes || yes ||

||     Voxel based radius || yes || yes ||

||     3D brush || yes || yes ||

||     Threshold based editing || yes || no ||

||     Clone brush || yes || no ||

||     When editing LUT volume, shows structure names || yes || yes ||

||     Only brush 0 values || no || yes ||

||     Custom list of LUT values || no || yes ||

||     Show edited voxels || yes || no ||

||     Edited voxel value buffer || yes || no ||

||     Straight line drawing || no || yes ||
+||     '''Target multiple volumes''' || Main and Aux || no ||

||     '''Single voxel brush size''' || yes || yes ||

||     '''Circular and square brushes''' || yes || yes ||

||     '''Size based radius''' || yes || yes ||

||     '''Voxel based radius''' || yes || yes ||

||     '''3D brush''' || yes || yes ||

||     '''Threshold based editing''' || yes || no ||

||     '''Clone brush''' || yes || no ||

||     '''When editing LUT volume, shows structure names''' || yes || yes ||

||     '''Only brush 0 values''' || no || yes ||

||     '''Custom list of LUT values''' || no || yes ||

||     '''Show edited voxels''' || yes || no ||

||     '''Edited voxel value buffer''' || yes || no ||

||     '''Straight line drawing''' || no || yes ||
 Line 46:
-||     3D filling || yes || yes ||

||     Variable fuzziness || yes || yes ||

||     Seed based fuzziness || yes || yes ||

||     Gradient based fuzziness || no || yes ||

||     Max distance || yes || yes ||

||     Draw paths to limit filling || no || yes ||

||     Can stop at other ROIs || no || yes ||

||     Only fill 0 values || no || yes ||

||     Choose source volume || yes || yes ||

||   Threshold volume || yes || no ||

||   Flip volume || yes || no ||

||   Rotate volume || yes || no ||

||   Smart cut || yes || no ||

|||||| ''ROI / Labels'' ||
+||     '''3D filling''' || yes || yes ||

||     '''Variable fuzziness''' || yes || yes ||

||     '''Seed based fuzziness''' || yes || yes ||

||     '''Gradient based fuzziness''' || no || yes ||

||     '''Max distance''' || yes || yes ||

||     '''Draw paths to limit filling''' || no || yes ||

||     '''Can stop at other ROIs''' || no || yes ||

||     '''Only fill 0 values''' || no || yes ||

||     '''Choose source volume''' || yes || yes ||

||||||   ''Operations'' ||

||   '''Threshold volume''' || yes || no ||

||   '''Flip volume''' || yes || no ||

||   '''Rotate volume''' || yes || no ||

||   '''Smart cut''' || yes || no ||

|| ||

|||||| '''ROI / Labels''' ||
-Line 61:
+Line 63:
-||     Draw labels on volumes || yes || yes ||

||     Straight line drawing || yes || yes ||
+||     '''Draw labels on volumes''' || yes || yes ||

||     '''Straight line drawing''' || yes || yes ||
-Line 64:
+Line 66:
-||     3D filling || yes || yes ||

||     Variable fuzziness || yes || yes ||

||     Seed based fuzziness || yes || yes ||

||     Gradient based fuzziness || no || yes ||

||     Max distance || yes || yes ||

||     Draw paths to limit filling || no || yes ||

||     Can stop at other ROIs || no || yes ||

||     Only fill 0 values || no || yes ||

||     Choose source volume || yes || yes ||

||   Select by functional overlay values || yes || no ||

|||||| ''Surface'' ||

||   Overlay surface intersections onto slices || yes || yes ||

||   Intersection display || interpolated or projected || interpolated ||

||   Number of simultaneous surfaces || 2 surface groups || unlimited ||

||   Automatically looks for and loads subject's surfaces || yes || no ||

||   Show nearest vertex to cursor || yes || yes ||

||   Show nearest edge to surface || yes || no ||

||   Jump to a vertex by number || yes || yes ||

||   Write distance values to vertex || yes || no ||

||   Write MRI value to vertex || yes || no ||

||   Change line color || yes || yes ||

||   Change vertex color || no || yes ||

||   Change line thickness || yes || yes ||

||   Color surface with annotation	values || yes || no ||

|||||| ''Control Points'' ||

||   Control points work for non-comformed volumes || no || yes ||

|||||| ''Time Course'' ||

||   Graph time course values || yes || no ||

||   Graph average of ROI || yes || no ||

||   Save graph to text file || yes || no ||

||   Save graph to Postscript file || yes || no ||

|| DTI Overlay || yes || no ||

|| Head Point Overlay || yes || no ||

|| GCA || yes || no ||

|| GDF || yes || no ||

|||||| ''Multiple viewing panes'' ||

||   2x2 view || yes || yes ||

||   1x3 view || no || yes ||

||   Mosaic mode || yes || no ||

|| Show volume index coords || yes || yes ||

|| Show volume value || yes || yes ||

|| Show volume value as segmentation label || yes || yes ||

|| Show RAS coords || yes (scanner) || yes ||

|| Show TkReg RAS coords || yes || no ||

|| Show Talariach coords || yes || no ||

|| Save and load cursor || yes || yes ||

|| Import surface annotation as segmentation || yes || no ||

|| Histogram Fill || no || yes ||

|| Data Collection Info Window || no || yes ||

|| Segementation Volume Report || no || yes ||

|| ROI Stats Window || no || yes ||

|| Volume ROI Intensity Chart || no || yes ||

|| Paths || no || yes ||

|| Scene Setup Script || no || yes ||

|| Save TIFF screen shot || yes || yes ||

|| Save RGB screen shot || yes || no ||
+||     '''3D filling''' || yes || yes ||

||     '''Variable fuzziness''' || yes || yes ||

||     '''Seed based fuzziness''' || yes || yes ||

||     '''Gradient based fuzziness''' || no || yes ||

||     '''Max distance''' || yes || yes ||

||     '''Draw paths to limit filling''' || no || yes ||

||     '''Can stop at other ROIs''' || no || yes ||

||     '''Only fill 0 values''' || no || yes ||

||     '''Choose source volume''' || yes || yes ||

||   '''Select by functional overlay values''' || yes || no ||

|| ||

|||||| '''Surface''' ||

||   '''Overlay surface intersections onto slices''' || yes || yes ||

||   '''Intersection display''' || interpolated or projected || interpolated ||

||   '''Number of simultaneous surfaces''' || 2 surface groups || unlimited ||

||   '''Automatically looks for and loads subject's surfaces''' || yes || no ||

||   '''Show nearest vertex to cursor''' || yes || yes ||

||   '''Show nearest edge to surface''' || yes || no ||

||   '''Jump to a vertex by number''' || yes || yes ||

||   '''Write distance values to vertex''' || yes || no ||

||   '''Write MRI value to vertex''' || yes || no ||

||   '''Change line color''' || yes || yes ||

||   '''Change vertex color''' || no || yes ||

||   '''Change line thickness''' || yes || yes ||

||   '''Color surface with annotation	values''' || yes || no ||

|| ||

|||||| '''Control Points''' ||

||   '''Control points work for non-comformed volumes''' || no || yes ||

|||||| '''Time Course''' ||

||   '''Graph time course values''' || yes || no ||

||   '''Graph average of ROI''' || yes || no ||

||   '''Save graph to text file''' || yes || no ||

||   '''Save graph to Postscript file''' || yes || no ||

|| ||

|| '''DTI Overlay''' || yes || no ||

|| '''Head Point Overlay''' || yes || no ||

|| '''GCA''' || yes || no ||

|| '''GDF''' || yes || no ||

|||||| '''Multiple viewing panes''' ||

||   '''2x2 view''' || yes || yes ||

||   '''1x3 view''' || no || yes ||

||   '''Mosaic mode''' || yes || no ||

|| ||

|| '''Show volume index coords''' || yes || yes ||

|| '''Show volume value''' || yes || yes ||

|| '''Show volume value as segmentation label''' || yes || yes ||

|| '''Show RAS coords''' || yes (scanner) || yes ||

|| '''Show TkReg RAS coords''' || yes || no ||

|| '''Show Talariach coords''' || yes || no ||

|| '''Save and load cursor''' || yes || yes ||

|| '''Import surface annotation as segmentation''' || yes || no ||

|| '''Histogram Fill''' || no || yes ||

|| '''Data Collection Info Window''' || no || yes ||

|| '''Segementation Volume Report''' || no || yes ||

|| '''ROI Stats Window''' || no || yes ||

|| '''Volume ROI Intensity Chart''' || no || yes ||

|| '''Paths''' || no || yes ||

|| '''Scene Setup Script''' || no || yes ||

|| '''Save TIFF screen shot''' || yes || yes ||

|| '''Save RGB screen shot''' || yes || no ||