Scripting

TableOfContents

Commands

Note that many commands take IDs, such as layerID, collectionID, viewID, toolID, frameID, etc. These IDs are generated when the objects they refer to are created. As input, they must refer to valid objects. If they don't you'll receive an error. All IDs are integers.

Anchor(AddSegVolReportIntensityVolume) AddSegVolReportIntensityVolume volID

Anchor(BeginValueRangeFillInView) BeginValueRangeFillInView viewID sourceVolID roiID destVolID

Anchor(CaptureFrameToFile) CaptureFrameToFile frameID fileName

Anchor(ClearSegVolReport) ClearSegVolReport

Anchor(ConvertWindowToViewRAS) ConvertWindowToViewRAS viewID windowX windowY

Anchor(CopyViewLayersToAllViewsInFrame) CopyViewLayersToAllViewsInFrame frameID viewID

Anchor(DeleteCollectionROI) DeleteCollectionROI collectionID roiID

Anchor(DeleteDataCollection) DeleteDataCollection collectionID

Anchor(DeleteLayer) DeleteLayer layerID

Anchor(DoOneValueRangeFillInView) DoOneValueRangeFillInView viewID beginValueRange endValueRange fillValue

Anchor(DontUseROIInSegVolReport) DontUseROIInSegVolReport

Anchor(EndValueRangeFillInView) EndValueRangeFillInView viewID

Anchor(ExportMarkersToControlPoints) ExportMarkersToControlPoints collectionID fileName

Anchor(Flood2DMRIVolume) Flood2DMRIVolume layerID x y z toolID viewID type

Anchor(Get2DMRILayerBrightness) Get2DMRILayerBrightness layerID

Anchor(Get2DMRILayerColorLUT) Get2DMRILayerColorLUT layerID

Anchor(Get2DMRILayerContrast) Get2DMRILayerContrast layerID

Anchor(Get2DMRILayerColorMapMethod) Get2DMRILayerColorMapMethod layerID

Anchor(Get2DMRILayerDrawMIP) Get2DMRILayerDrawMIP layerID

Anchor(Get2DMRILayerDrawZeroClear) Get2DMRILayerDrawZeroClear layerID

Anchor(Get2DMRILayerEditableROI) Get2DMRILayerEditableROI layerID

Anchor(Get2DMRILayerHeatScaleMax) Get2DMRILayerHeatScaleMax layerID

Anchor(Get2DMRILayerHeatScaleMid) Get2DMRILayerHeatScaleMid layerID

Anchor(Get2DMRILayerHeatScaleMin) Get2DMRILayerHeatScaleMin layerID

Anchor(Get2DMRILayerMaxValue) Get2DMRILayerMaxValue layerID

Anchor(Get2DMRILayerMaxVisibleValue) Get2DMRILayerMaxVisibleValue layerID

Anchor(Get2DMRILayerMinValue) Get2DMRILayerMinValue layerID

Anchor(Get2DMRILayerMinVisibleValue) Get2DMRILayerMinVisibleValue layerID

Anchor(Get2DMRILayerROIOpacity) Get2DMRILayerROIOpacity layerID

Anchor(Get2DMRILayerSampleMethod) Get2DMRILayerSampleMethod layerID

Anchor(Get2DMRILayerVolumeCollection) Get2DMRILayerVolumeCollection layerID

Anchor(Get2DMRIRASCoordsFromIndex) Get2DMRIRASCoordsFromIndex layerID x y z

Anchor(Get2DMRISLayerLineColor) Get2DMRISLayerLineColor layerID

Anchor(Get2DMRISLayerLineWidth) Get2DMRISLayerLineWidth layerID

Anchor(Get2DMRISLayerSurfaceCollection) Get2DMRISLayerSurfaceCollection layerID

Anchor(Get2DMRISLayerVertexColor) Get2DMRISLayerVertexColor layerID

Anchor(Get2DMRISNearestVertexIndex) Get2DMRISNearestVertexIndex layerID x y z

Anchor(Get2DMRISRASCoordsFromVertexIndex) Get2DMRISRASCoordsFromVertexIndex layerID vertexIndex

Anchor(GetCollectionLabel) GetCollectionLabel collectionID

Anchor(GetCollectionType) GetCollectionType collectionID

Anchor(GetColorLUTEntryLabel) GetColorLUTEntryLabel lutID entry

Anchor(GetColorLUTEntryRGB) GetColorLUTEntryRGB lutID entry

Anchor(GetColorLUTFileName) GetColorLUTFileName lutID

Anchor(GetColorLUTIDList) GetColorLUTIDList

Anchor(GetColorLUTLabel) GetColorLUTLabel lutID

Anchor(GetColorLUTNumberOfEntries) GetColorLUTNumberOfEntries lutID

Anchor(GetColumnOfViewInFrame) GetColumnOfViewInFrame frameID viewID

Anchor(CycleCurrentViewInFrame) CycleCurrentViewInFrame frameID

Anchor(GetDataCollectionIDList) GetDataCollectionIDList

Anchor(GetFirstUnusedDrawLevelInView) GetFirstUnusedDrawLevelInView viewID

Anchor(GetLayerIDList) GetLayerIDList

Anchor(GetLayerInViewAtLevel) GetLayerInViewAtLevel viewID level

Anchor(GetLayerLabel) GetLayerLabel layerID

Anchor(GetLayerMainDataCollection) GetLayerMainDataCollection layerID

Anchor(GetLayerOpacity) GetLayerOpacity layerID

Anchor(GetLayerReportInfo) GetLayerReportInfo layerID

Anchor(GetLayerType) GetLayerType layerID

Anchor(GetLevelReportInfoInView) GetLevelReportInfoInView viewID level

Anchor(GetLevelVisibilityInView) GetLevelVisibilityInView viewID level

Anchor(GetMainFrameID) GetMainFrameID

Anchor(GetNumberOfColsAtRowInFrame) GetNumberOfColsAtRowInFrame frameID row

Anchor(GetNumberOfRowsInFrame) GetNumberOfRowsInFrame frameID

Anchor(GetNumberOfViewMarkers) GetNumberOfViewMarkers

Anchor(GetRASCoordsFromVolumeSurfaceRAS) GetRASCoordsFromVolumeSurfaceRAS collectionID x y z

Anchor(GetROIIDList) GetROIIDList

Anchor(GetROIIDListForCollection) GetROIIDListForCollection collectionID

Anchor(GetRowOfViewInFrame) GetRowOfViewInFrame frameID viewID

Anchor(GetSelectedViewID) GetSelectedViewID frameID

Anchor(GetSubjectDir) GetSubjectDir

Anchor(GetSubjectName) GetSubjectName

Anchor(GetSurfaceCollectionFileName) GetSurfaceCollectionFileName collectionID

Anchor(GetSurfaceDataToSurfaceTransformVolume) GetSurfaceDataToSurfaceTransformVolume collectionID

Anchor(GetSurfaceUseRealRAS) GetSurfaceUseRealRAS collectionID

Anchor(GetToolBrush3D) GetToolBrush3D toolID

Anchor(GetToolBrushRadius) GetToolBrushRadius toolID

Anchor(GetToolBrushShape) GetToolBrushShape toolID

Anchor(GetToolEdgePathEdgeBias) GetToolEdgePathEdgeBias toolID

Anchor(GetToolEdgePathStraightBias) GetToolEdgePathStraightBias toolID

Anchor(GetToolEraseVoxelValue) GetToolEraseVoxelValue toolID

Anchor(GetToolFlood3D) GetToolFlood3D toolID

Anchor(GetToolFloodFuzziness) GetToolFloodFuzziness toolID

Anchor(GetToolFloodFuzzinessType) GetToolFloodFuzzinessType toolID

Anchor(GetToolFloodMaxDistance) GetToolFloodMaxDistance toolID

Anchor(GetToolFloodSourceCollection) GetToolFloodSourceCollection toolID

Anchor(GetToolFloodStopAtPaths) GetToolFloodStopAtPaths toolID

Anchor(GetToolFloodStopAtROIs) GetToolFloodStopAtROIs toolID

Anchor(GetToolIDForFrame) GetToolIDForFrame frameID

Anchor(GetToolMode) GetToolMode toolID

Anchor(GetToolNewVoxelValue) GetToolNewVoxelValue toolID

Anchor(GetToolOnlyBrushZero) GetToolOnlyBrushZero toolID

Anchor(GetToolOnlyFloodZero) GetToolOnlyFloodZero toolID

Anchor(GetToolTargetLayer) GetToolTargetLayer toolID

Anchor(GetTransformIDList) GetTransformIDList

Anchor(GetTransformLabel) GetTransformLabel transformID

Anchor(GetTransformRegistrationDest) GetTransformRegistrationDest transformID

Anchor(GetTransformRegistrationSource) GetTransformRegistrationSource transformID

Anchor(GetTransformValues) GetTransformValues transformID

Anchor(GetUseVolumeDataToIndexTransform) GetUseVolumeDataToIndexTransform collectionID

Anchor(GetViewFlipLeftRightYZ) GetViewFlipLeftRightYZ viewID

Anchor(GetViewIDAtFrameLocation) GetViewIDAtFrameLocation frameID windowX windowY

Anchor(GetViewIDFromFrameColRow) GetViewIDFromFrameColRow frameID col row

Anchor(GetViewInPlane) GetViewInPlane viewID

Anchor(GetViewLockOnCursor) GetViewLockOnCursor viewID

Anchor(GetViewLinkedStatus) GetViewLinkedStatus viewID

Anchor(GetViewRASCenter) GetViewRASCenter viewID

Anchor(GetViewRASCursor) GetViewRASCursor

Anchor(GetViewThroughPlaneIncrement) GetViewThroughPlaneIncrement viewID throughPlane

Anchor(GetViewTransform) GetViewTransform viewID

Anchor(GetViewZoomLevel) GetViewZoomLevel viewID

Anchor(GetVolumeAutosaveOn) GetVolumeAutosaveOn collectionID

Anchor(GetVolumeAverageValueInROI) GetVolumeAverageValueInROI collectionID roiID

Anchor(GetVolumeCollectionFileName) GetVolumeCollectionFileName collectionID

Anchor(GetVolumeHistogramInView) GetVolumeHistogramInView viewID volID roiID numBins

Anchor(GetVolumeStandardDeviationInROI) GetVolumeStandardDeviationInROI collectionID roiID

Anchor(GetVolumeSurfaceRASCoordsFromRAS) GetVolumeSurfaceRASCoordsFromRAS collectionID x y z

Anchor(ImportMarkersFromControlPoints) ImportMarkersFromControlPoints collectionID fileName

Anchor(InvertTransform) InvertTransform transformID

Anchor(IsSurfaceUsingDataToSurfaceTransformFromVolume) IsSurfaceUsingDataToSurfaceTransformFromVolume collectionID

Anchor(IsTransformRegistration) IsTransformRegistration transformID

Anchor(LoadVolume) LoadVolume fileName createLayer frameIDToAdd

Anchor(LoadVolumeFromFileName) LoadVolumeFromFileName collectionID

Anchor(LoadSurface) LoadSurface fileName createLayer frameIDToAdd

Anchor(LoadSurfaceFromFileName) LoadSurfaceFromFileName collectionID

Anchor(LoadSurfacePatch) LoadSurfacePatch collectionID fileName

Anchor(LoadTransform) LoadTransform fileName

Anchor(LoadTransformFromLTAFile) LoadTransformFromLTAFile transformID LTAFileName

Anchor(MakeDataCollection) MakeDataCollection collectionType

Volume

A 3D volume for display in a 2DMRI layer.

Surface

A 3D surface for display in a 2DMRIS layer.

Anchor(MakeLayer) MakeLayer layerType

2DMRI

A layer for drawing a volume

2DMRIS

A layer for showing a surface intersected on a plane

Anchor(MakeLayer) MakeLayer layerType

2DMRI

A layer for drawing a volume

2DMRIS

A layer for showing a surface intersected on a plane

Anchor(MakeNewColorLUT) MakeNewColorLUT

Anchor(MakeNewTransform) MakeNewTransform

Anchor(MakeSegVolIntensityReport) MakeSegVolIntensityReport fnReport

Anchor(MakeSegVolReport) MakeSegVolReport fnReport

Anchor(MakeVolumeUsingTemplate) MakeVolumeUsingTemplate collectionID templateCollectionID

Anchor(NewCollectionROI) NewCollectionROI collectionID

Anchor(NewVolume) NewVolume templateID createLayer frameIDToAdd

Anchor(NewVolumeROIFromLabel) NewVolumeROIFromLabel collectionID fileName

Anchor(PrintAllCommands) PrintAllCommands

Anchor(ReadPathFile) ReadPathFile fileName

Anchor(RedrawFrame) RedrawFrame frameID

Anchor(RemoveAllLayersFromView) RemoveAllLayersFromView viewID

Anchor(RemoveLayerFromViewAtLevel) RemoveLayerFromViewAtLevel viewID level

Anchor(SaveSceneScript) SaveSceneScript fileName

Anchor(SaveVolume) SaveVolume collectionID

Anchor(SaveVolumeWithFileName) SaveVolumeWithFileName collectionID fileName

Anchor(SelectCollectionROI) SelectCollectionROI collectionID roiID

Anchor(Set2DMRILayerBrightness) Set2DMRILayerBrightness layerID brightness

Anchor(Set2DMRILayerColorLUT) Set2DMRILayerColorLUT layerID lutID

Anchor(Set2DMRILayerColorMapMethod) Set2DMRILayerColorMapMethod layerID method

Anchor(Set2DMRILayerContrast) Set2DMRILayerContrast layerID contrast

Anchor(Set2DMRILayerDrawMIP) Set2DMRILayerDrawMIP layerID drawMIP

Anchor(Set2DMRILayerDrawZeroClear) Set2DMRILayerDrawZeroClear layerID drawClear

Anchor(Set2DMRILayerEditableROI) Set2DMRILayerEditableROI layerID editable

Anchor(Set2DMRILayerHeatScaleMax) Set2DMRILayerHeatScaleMax layerID value

Anchor(Set2DMRILayerHeatScaleMid) Set2DMRILayerHeatScaleMid layerID value

Anchor(Set2DMRILayerHeatScaleMin) Set2DMRILayerHeatScaleMin layerID value

Anchor(Set2DMRILayerMaxVisibleValue) Set2DMRILayerMaxVisibleValue layerID value

Anchor(Set2DMRILayerMinVisibleValue) Set2DMRILayerMinVisibleValue layerID value

Anchor(Set2DMRILayerROIOpacity) Set2DMRILayerROIOpacity layerID opacity

Anchor(Set2DMRILayerSampleMethod) Set2DMRILayerSampleMethod layerID method

Anchor(Set2DMRILayerVolumeCollection) Set2DMRILayerVolumeCollection layerID collectionID

Anchor(Set2DMRISLayerLineColor) Set2DMRISLayerLineColor layerID red green blue

Anchor(Set2DMRISLayerLineWidth) Set2DMRISLayerLineWidth layerID width

Anchor(Set2DMRISLayerSurfaceCollection) Set2DMRISLayerSurfaceCollection layerID collectionID

Anchor(Set2DMRISLayerVertexColor) Set2DMRISLayerVertexColor layerID red green blue

Anchor(SetCollectionLabel) SetCollectionLabel collectionID label

Anchor(SetColorLUTFileName) SetColorLUTFileName lutID fileName

Anchor(SetColorLUTLabel) SetColorLUTLabel lutID label

Anchor(SetCursorFromEditDatFile) SetCursorFromEditDatFile

Anchor(SetCursorFromSurfaceVertexIndex) SetCursorFromSurfaceVertexIndex layerID vertexNumber

Anchor(SetCursorFromVolumeIndexCoords) SetCursorFromVolumeIndexCoords collectionID x y z

Anchor(SetDataTransform) SetDataTransform collectionID transformID

Anchor(SetFrameViewConfiguration) SetFrameViewConfiguration frameID configuration

Anchor(SetLayerInViewAtLevel) SetLayerInViewAtLevel viewID layerID level

Anchor(SetLayerLabel) SetLayerLabel layerID label

Anchor(SetLayerOpacity) SetLayerOpacity layerID opacity

Anchor(SetLayerReportInfo) SetLayerReportInfo layerID report

Anchor(SetLevelReportInfoInView) SetLevelReportInfoInView viewID level reportInfo

Anchor(SetLevelVisibilityInView) SetLevelVisibilityInView viewID level visibility

Anchor(SetNumberOfViewMarkers) SetNumberOfViewMarkers numMarkers

Anchor(SetROIForSegVolReport) SetROIForSegVolReport volID roiID

Anchor(SetSegVolReportLUT) SetSegVolReportLUT lutID

Anchor(SetSegVolReportSegmentation) SetSegVolReportSegmentation segID

Anchor(SetSelectedViewID) SetSelectedViewID frameID viewID

Anchor(SetSurfaceCollectionFileName) SetSurfaceCollectionFileName collectionID fileName

Anchor(SetSurfaceDataToSurfaceTransformFromVolume) SetSurfaceDataToSurfaceTransformFromVolume collectionID volumeID

Anchor(SetSurfaceDataToSurfaceTransformToDefault) SetSurfaceDataToSurfaceTransformToDefault collectionID

Anchor(SetToolBrush3D) SetToolBrush3D toolID 3D

Anchor(SetToolBrushRadius) SetToolBrushRadius toolID radius

Anchor(SetToolBrushShape) SetToolBrushShape toolID shape

Anchor(SetToolEdgePathEdgeBias) SetToolEdgePathEdgeBias toolID bias

Anchor(SetToolEdgePathStraightBias) SetToolEdgePathStraightBias toolID bias

Anchor(SetToolEraseVoxelValue) SetToolEraseVoxelValue toolID value

Anchor(SetToolFlood3D) SetToolFlood3D toolID 3D

Anchor(SetToolFloodFuzziness) SetToolFloodFuzziness toolID fuzziness

Anchor(SetToolFloodFuzzinessType) SetToolFloodFuzzinessType toolID type

Anchor(SetToolFloodMaxDistance) SetToolFloodMaxDistance toolID distance

Anchor(SetToolFloodSourceCollection) SetToolFloodSourceCollection toolID collectionID

Anchor(SetToolFloodStopAtPaths) SetToolFloodStopAtPaths toolID stop

Anchor(SetToolFloodStopAtROIs) SetToolFloodStopAtROIs toolID stop

Anchor(SetToolMode) SetToolMode toolID mode

navigation

The navigation tool

plane

The plane tool

marker

The marker tool

voxelEditing

The voxel editing tool

voxelFilling

The voxel filling tool

roiEditing

The ROI editing tool

roiFilling

The ROI filling tool

straightPath

The straight path tool

edgePath

The edge path tool

Anchor(SetToolNewVoxelValue) SetToolNewVoxelValue toolID value

Anchor(SetToolOnlyBrushZero) SetToolOnlyBrushZero toolID onlyZero

Anchor(SetToolOnlyFloodZero) SetToolOnlyFloodZero toolID onlyZero

Anchor(SetToolTargetLayer) SetToolTargetLayer toolID layerID

Anchor(SetTransformLabel) SetTransformLabel transformID label

Anchor(SetTransformValues) SetTransformValues transformID listOfValues

Anchor(SetUseVolumeDataToIndexTransform) SetUseVolumeDataToIndexTransform collectionID use

Anchor(SetViewFlipLeftRightYZ) SetViewFlipLeftRightYZ viewID flip

Anchor(SetViewInPlane) SetViewInPlane viewID inPlane

Anchor(SetViewLinkedStatus) SetViewLinkedStatus viewID linked

Anchor(SetViewLockOnCursor) SetViewLockOnCursor viewID lock

Anchor(SetViewRASCenter) SetViewRASCenter viewID x y z

Anchor(SetViewRASCursor) SetViewRASCursor x y z

Anchor(SetViewStateToLayerBounds) SetViewStateToLayerBounds viewID layerID

Anchor(SetViewThroughPlaneIncrement) SetViewThroughPlaneIncrement viewID throughPlane increment

Anchor(SetViewTransform) SetViewTransform viewID transformID

Anchor(SetViewZoomLevel) SetViewZoomLevel viewID zoomLevel

Anchor(SetVolumeAutosaveOn) SetVolumeAutosaveOn collectionID on

Anchor(SetVolumeCollectionFileName) SetVolumeCollectionFileName collectionID fileName

Anchor(TreatTransformAsNative) TreatTransformAsNative transformID

Anchor(TreatTransformAsRegistration) TreatTransformAsRegistration transformID sourceVolumeID destVolumeID

Anchor(UpdateFrame) UpdateFrame frameID

Anchor(WriteCursorToEditDatFile) WriteCursorToEditDatFile

Anchor(WritePathFile) WritePathFile fileName

Anchor(WriteVolumeROIsToSegmentation) WriteVolumeROIsToSegmentation collectionID fileName

Anchor(WriteVolumeROIToLabel) WriteVolumeROIToLabel collectionID roiID fileName

Index

Loading Data

[#NewVolume NewVolume] [#LoadVolume LoadVolume] [#LoadSurface LoadSurface] [#LoadTransform LoadTransform]

Frames

[#GetMainFrameID GetMainFrameID] [#UpdateFrame UpdateFrame] [#RedrawFrame RedrawFrame] [#SetFrameViewConfiguration SetFrameViewConfiguration] [#GetViewIDFromFrameColRow GetViewIDFromFrameColRow] [#GetSelectedViewID GetSelectedViewID] [#SetSelectedViewID SetSelectedViewID] [#GetNumberOfRowsInFrame GetNumberOfRowsInFrame] [#GetNumberOfColsAtRowInFrame GetNumberOfColsAtRowInFrame] [#GetViewIDAtFrameLocation GetViewIDAtFrameLocation] [#GetColumnOfViewInFrame GetColumnOfViewInFrame] [#GetRowOfViewInFrame GetRowOfViewInFrame] [#CopyViewLayersToAllViewsInFrame CopyViewLayersToAllViewsInFrame] [#GetToolIDForFrame GetToolIDForFrame] [#CycleCurrentViewInFrame CycleCurrentViewInFrame] [#CaptureFrameToFile CaptureFrameToFile]

Views

[#SaveSceneScript SaveSceneScript] [#ConvertWindowToViewRAS ConvertWindowToViewRAS]

View State

[#SetViewInPlane SetViewInPlane] [#GetViewInPlane GetViewInPlane] [#SetViewZoomLevel SetViewZoomLevel] [#GetViewZoomLevel GetViewZoomLevel] [#SetViewRASCenter SetViewRASCenter] [#GetViewRASCenter GetViewRASCenter] [#SetViewStateToLayerBounds SetViewStateToLayerBounds] [#SetViewLinkedStatus SetViewLinkedStatus] [#GetViewLinkedStatus GetViewLinkedStatus] [#SetViewLockOnCursor SetViewLockOnCursor] [#GetViewLockOnCursor GetViewLockOnCursor] [#SetViewTransform SetViewTransform] [#GetViewTransform GetViewTransform] [#SetViewFlipLeftRightYZ SetViewFlipLeftRightYZ] [#GetViewFlipLeftRightYZ GetViewFlipLeftRightYZ] [#SetViewThroughPlaneIncrement SetViewThroughPlaneIncrement] [#GetViewThroughPlaneIncrement GetViewThroughPlaneIncrement]

Draw Levels

[#SetLayerInViewAtLevel SetLayerInViewAtLevel] [#GetLayerInViewAtLevel GetLayerInViewAtLevel] [#RemoveAllLayersFromView RemoveAllLayersFromView] [#RemoveLayerFromViewAtLevel RemoveLayerFromViewAtLevel] [#SetLevelVisibilityInView SetLevelVisibilityInView] [#GetLevelVisibilityInView GetLevelVisibilityInView] [#SetLevelReportInfoInView SetLevelReportInfoInView] [#GetLevelReportInfoInView GetLevelReportInfoInView] [#GetFirstUnusedDrawLevelInView GetFirstUnusedDrawLevelInView]

Cursor

[#SetViewRASCursor SetViewRASCursor] [#GetViewRASCursor GetViewRASCursor] [#SetCursorFromSurfaceVertexIndex SetCursorFromSurfaceVertexIndex] [#SetCursorFromVolumeIndexCoords SetCursorFromVolumeIndexCoords] [#SetCursorFromEditDatFile SetCursorFromEditDatFile] [#WriteCursorToEditDatFile WriteCursorToEditDatFile]

Markers

[#SetNumberOfViewMarkers SetNumberOfViewMarkers] [#GetNumberOfViewMarkers GetNumberOfViewMarkers] [#ExportMarkersToControlPoints ExportMarkersToControlPoints] [#ImportMarkersFromControlPoints ImportMarkersFromControlPoints]

Paths

[#WritePathFile WritePathFile] [#ReadPathFile ReadPathFile]

Layers

[#GetLayerIDList GetLayerIDList] [#MakeLayer MakeLayer] [#DeleteLayer DeleteLayer] [#SetLayerLabel SetLayerLabel] [#GetLayerLabel GetLayerLabel] [#GetLayerType GetLayerType] [#GetLayerOpacity GetLayerOpacity] [#SetLayerOpacity SetLayerOpacity] [#GetLayerReportInfo GetLayerReportInfo] [#SetLayerReportInfo SetLayerReportInfo] [#GetLayerMainDataCollection GetLayerMainDataCollection]

2DMRI Layer

[#Set2DMRILayerVolumeCollection Set2DMRILayerVolumeCollection] [#Get2DMRILayerVolumeCollection Get2DMRILayerVolumeCollection] [#Set2DMRILayerColorMapMethod Set2DMRILayerColorMapMethod] [#Get2DMRILayerColorMapMethod Get2DMRILayerColorMapMethod] [#Set2DMRILayerSampleMethod Set2DMRILayerSampleMethod] [#Get2DMRILayerSampleMethod Get2DMRILayerSampleMethod] [#Set2DMRILayerBrightness Set2DMRILayerBrightness] [#Get2DMRILayerBrightness Get2DMRILayerBrightness] [#Set2DMRILayerContrast Set2DMRILayerContrast] [#Get2DMRILayerContrast Get2DMRILayerContrast] [#Set2DMRILayerColorLUT Set2DMRILayerColorLUT] [#Get2DMRILayerColorLUT Get2DMRILayerColorLUT] [#Set2DMRILayerDrawZeroClear Set2DMRILayerDrawZeroClear] [#Get2DMRILayerDrawZeroClear Get2DMRILayerDrawZeroClear] [#Set2DMRILayerDrawMIP Set2DMRILayerDrawMIP] [#Get2DMRILayerDrawMIP Get2DMRILayerDrawMIP] [#Set2DMRILayerMinVisibleValue Set2DMRILayerMinVisibleValue] [#Get2DMRILayerMinVisibleValue Get2DMRILayerMinVisibleValue] [#Set2DMRILayerMaxVisibleValue Set2DMRILayerMaxVisibleValue] [#Get2DMRILayerMaxVisibleValue Get2DMRILayerMaxVisibleValue] [#Get2DMRILayerMinValue Get2DMRILayerMinValue] [#Get2DMRILayerMaxValue Get2DMRILayerMaxValue] [#Get2DMRILayerHeatScaleMin Get2DMRILayerHeatScaleMin] [#Set2DMRILayerHeatScaleMin Set2DMRILayerHeatScaleMin] [#Get2DMRILayerHeatScaleMid Get2DMRILayerHeatScaleMid] [#Set2DMRILayerHeatScaleMid Set2DMRILayerHeatScaleMid] [#Get2DMRILayerHeatScaleMax Get2DMRILayerHeatScaleMax] [#Set2DMRILayerHeatScaleMax Set2DMRILayerHeatScaleMax] [#Set2DMRILayerROIOpacity Set2DMRILayerROIOpacity] [#Get2DMRILayerROIOpacity Get2DMRILayerROIOpacity] [#Set2DMRILayerEditableROI Set2DMRILayerEditableROI] [#Get2DMRILayerEditableROI Get2DMRILayerEditableROI] [#Get2DMRIRASCoordsFromIndex Get2DMRIRASCoordsFromIndex] [#Flood2DMRIVolume Flood2DMRIVolume]

2DMRIS Layer

[#Set2DMRISLayerSurfaceCollection Set2DMRISLayerSurfaceCollection] [#Get2DMRISLayerSurfaceCollection Get2DMRISLayerSurfaceCollection] [#Set2DMRISLayerLineColor Set2DMRISLayerLineColor] [#Get2DMRISLayerLineColor Get2DMRISLayerLineColor] [#Set2DMRISLayerVertexColor Set2DMRISLayerVertexColor] [#Get2DMRISLayerVertexColor Get2DMRISLayerVertexColor] [#Set2DMRISLayerLineWidth Set2DMRISLayerLineWidth] [#Get2DMRISLayerLineWidth Get2DMRISLayerLineWidth] [#Get2DMRISRASCoordsFromVertexIndex Get2DMRISRASCoordsFromVertexIndex] [#Get2DMRISNearestVertexIndex Get2DMRISNearestVertexIndex]

ROIs

[#GetROIIDList GetROIIDList]

Color LUTs

[#GetColorLUTIDList GetColorLUTIDList] [#MakeNewColorLUT MakeNewColorLUT] [#SetColorLUTLabel SetColorLUTLabel] [#GetColorLUTLabel GetColorLUTLabel] [#SetColorLUTFileName SetColorLUTFileName] [#GetColorLUTFileName GetColorLUTFileName] [#GetColorLUTNumberOfEntries GetColorLUTNumberOfEntries] [#GetColorLUTEntryLabel GetColorLUTEntryLabel] [#GetColorLUTEntryRGB GetColorLUTEntryRGB] [#IsColorLUTEntryValid IsColorLUTEntryValid]

Transforms

[#GetTransformIDList GetTransformIDList] [#MakeNewTransform MakeNewTransform] [#SetTransformLabel SetTransformLabel] [#GetTransformLabel GetTransformLabel] [#SetTransformValues SetTransformValues] [#GetTransformValues GetTransformValues] [#LoadTransformFromLTAFile LoadTransformFromLTAFile] [#InvertTransform InvertTransform] [#TreatTransformAsRegistration TreatTransformAsRegistration] [#TreatTransformAsNative TreatTransformAsNative] [#IsTransformRegistration IsTransformRegistration] [#GetTransformRegistrationSource GetTransformRegistrationSource] [#GetTransformRegistrationDest GetTransformRegistrationDest]

Data Collections

[#GetDataCollectionIDList GetDataCollectionIDList] [#MakeDataCollection MakeDataCollection] [#DeleteDataCollection DeleteDataCollection]

Volumes

[#SetUseVolumeDataToIndexTransform SetUseVolumeDataToIndexTransform] [#GetUseVolumeDataToIndexTransform GetUseVolumeDataToIndexTransform] [#SetVolumeAutosaveOn SetVolumeAutosaveOn] [#GetVolumeAutosaveOn GetVolumeAutosaveOn] [#GetRASCoordsFromVolumeSurfaceRAS GetRASCoordsFromVolumeSurfaceRAS] [#GetVolumeSurfaceRASCoordsFromRAS GetVolumeSurfaceRASCoordsFromRAS] [#GetVolumeAverageValueInROI GetVolumeAverageValueInROI] [#GetVolumeStandardDeviationInROI GetVolumeStandardDeviationInROI]

Segmentation Volume Report

[#ClearSegVolReport ClearSegVolReport] [#SetSegVolReportSegmentation SetSegVolReportSegmentation] [#AddSegVolReportIntensityVolume AddSegVolReportIntensityVolume] [#SetROIForSegVolReport SetROIForSegVolReport] [#DontUseROIInSegVolReport DontUseROIInSegVolReport] [#SetSegVolReportLUT SetSegVolReportLUT] [#AddSegmentationToSegVolReport AddSegmentationToSegVolReport] [#MakeSegVolReport MakeSegVolReport] [#MakeSegVolIntensityReport MakeSegVolIntensityReport]

Volume Histogram

[#GetVolumeHistogramInView GetVolumeHistogramInView] [#BeginValueRangeFillInView BeginValueRangeFillInView] [#DoOneValueRangeFillInView DoOneValueRangeFillInView] [#EndValueRangeFillInView EndValueRangeFillInView]

Surfaces

[#SetSurfaceCollectionFileName SetSurfaceCollectionFileName] [#LoadSurfaceFromFileName LoadSurfaceFromFileName] [#GetSurfaceCollectionFileName GetSurfaceCollectionFileName] [#SetSurfaceDataToSurfaceTransformFromVolume SetSurfaceDataToSurfaceTransformFromVolume] [#SetSurfaceDataToSurfaceTransformToDefault SetSurfaceDataToSurfaceTransformToDefault] [#IsSurfaceUsingDataToSurfaceTransformFromVolume IsSurfaceUsingDataToSurfaceTransformFromVolume] [#GetSurfaceDataToSurfaceTransformVolume GetSurfaceDataToSurfaceTransformVolume] [#LoadSurfacePatch LoadSurfacePatch] [#GetSurfaceUseRealRAS GetSurfaceUseRealRAS]

Tools

[#SetToolMode SetToolMode] [#GetToolMode GetToolMode] [#SetToolTargetLayer SetToolTargetLayer] [#GetToolTargetLayer GetToolTargetLayer] [#SetToolNewVoxelValue SetToolNewVoxelValue] [#GetToolNewVoxelValue GetToolNewVoxelValue] [#SetToolEraseVoxelValue SetToolEraseVoxelValue] [#GetToolEraseVoxelValue GetToolEraseVoxelValue] [#SetToolOnlyBrushZero SetToolOnlyBrushZero] [#GetToolOnlyBrushZero GetToolOnlyBrushZero] [#SetToolBrushRadius SetToolBrushRadius] [#GetToolBrushRadius GetToolBrushRadius] [#SetToolBrushShape SetToolBrushShape] [#GetToolBrushShape GetToolBrushShape] [#SetToolBrush3D SetToolBrush3D] [#GetToolBrush3D GetToolBrush3D] [#SetToolFloodStopAtPaths SetToolFloodStopAtPaths] [#GetToolFloodStopAtPaths GetToolFloodStopAtPaths] [#SetToolFloodStopAtROIs SetToolFloodStopAtROIs] [#GetToolFloodStopAtROIs GetToolFloodStopAtROIs] [#SetToolFloodFuzziness SetToolFloodFuzziness] [#GetToolFloodFuzziness GetToolFloodFuzziness] [#SetToolFloodMaxDistance SetToolFloodMaxDistance] [#GetToolFloodMaxDistance GetToolFloodMaxDistance] [#SetToolFlood3D SetToolFlood3D] [#GetToolFlood3D GetToolFlood3D] [#SetToolFloodSourceCollection SetToolFloodSourceCollection] [#SetToolFloodFuzzinessType SetToolFloodFuzzinessType] [#GetToolFloodFuzzinessType GetToolFloodFuzzinessType] [#GetToolFloodSourceCollection GetToolFloodSourceCollection] [#SetToolOnlyFloodZero SetToolOnlyFloodZero] [#GetToolOnlyFloodZero GetToolOnlyFloodZero] [#SetToolEdgePathStraightBias SetToolEdgePathStraightBias] [#GetToolEdgePathStraightBias GetToolEdgePathStraightBias] [#SetToolEdgePathEdgeBias SetToolEdgePathEdgeBias] [#GetToolEdgePathEdgeBias GetToolEdgePathEdgeBias]

Miscellaneous

[#GetSubjectName GetSubjectName] [#GetSubjectDir GetSubjectDir] [#PrintAllCommands PrintAllCommands]