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| Ftp access | = Needs to be incorporated = |
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| * Ftp access for sending data and receiving binaries from us? <http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp> |
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| PBS | Segmented volume |
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| * How can I use the batch queuing system *PBS* on seychelles? <http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS> * How can I hold the queue until some queues finish? |
* How can I create a segmented volume and see it? < http://www.nmr.mgh.harvard.edu/%7Etosa/#seg > Template Atlas * How can I create a template atlas file? < http://www.nmr.mgh.harvard.edu/%7Etosa/#template > File name extensions * What is the use of @ and # for filename? < http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound > Talairach transformed image * How can I create talairach transformed image? < http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform > Data formats in lh/rh.sulc. * What are the data in *lh.sulc* and rh.sulc? < http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc > Cortical parcellation * How can I do *cortical parcellation*? < http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc > Subcortical segmentation atlas creation * How can I create *subcortical segmentation atlas*? < http://www.nmr.mgh.harvard.edu/%7Etosa/#gca > Using the subcortical segmentation to create automatic segmentation * How can I create *subcortical segmentation*? < http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor > Defacing a subject * How can I do the defacing of a subject? < http://www.nmr.mgh.harvard.edu/%7Etosa/#deface > Monkey brain processing * How can I normalize Monkey brain? < http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey > DICOM file format info * How can I see a *DICOM functional image*? < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom > = Already incorporated = |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#coords> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords > |
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| vertex position? <http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras> | vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos > |
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| Segmented volume | |
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| * How can I create a segmented volume and see it? <http://www.nmr.mgh.harvard.edu/%7Etosa/#seg> |
DICOM file format info |
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| Template Atlas | * DICOM Specifications < http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html > |
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| * How can I create a template atlas file? <http://www.nmr.mgh.harvard.edu/%7Etosa/#template> |
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| File name extensions | Medical Image Formats info. |
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| * What is the use of @ and # for filename? <http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound> |
* FAQ on Medical Image Format < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat > |
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| Talairach transformed image | Ftp access |
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| * How can I create talairach transformed image? <http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform> |
* Ftp access for sending data and receiving binaries from us? < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp > CVS remotely * How can I CVS checkout files remotely? < http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs > PBS (Not relevant to Documentation Wiki) * How can I use the batch queuing system *PBS* on seychelles? < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS > * How can I hold the queue until some queues finish? DICOM file format info * How can I get the *image position/orientation of a DICOM file*? |
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| a unit matrix? <http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal> | a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal > |
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| Data formats in lh/rh.sulc. * What are the data in *lh.sulc* and rh.sulc? <http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc> Cortical parcellation * How can I do *cortical parcellation*? <http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc> Subcortical segmentation atlas creation * How can I create *subcortical segmentation atlas*? <http://www.nmr.mgh.harvard.edu/%7Etosa/#gca> Using the subcortical segmentation to create automatic segmentation * How can I create *subcortical segmentation*? <http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor> Defacing a subject * How can I do the defacing of a subject? <http://www.nmr.mgh.harvard.edu/%7Etosa/#deface> Monkey brain processing * How can I normalize Monkey brain? <http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey> DICOM file format info * DICOM Specifications <http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html> * How can I see a *DICOM functional image*? <http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom> * How can I get the *image position/orientation of a DICOM file*? CVS remotely * How can I CVS checkout files remotely? <http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs> Medical Image Formats info. * FAQ on Medical Image Format <http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat> |
Needs to be incorporated
Segmented volume
- How can I create a segmented volume and see it?
Template Atlas
- How can I create a template atlas file?
File name extensions
- What is the use of @ and # for filename?
Talairach transformed image
- How can I create talairach transformed image?
Data formats in lh/rh.sulc.
- What are the data in *lh.sulc* and rh.sulc?
Cortical parcellation
- How can I do *cortical parcellation*?
Subcortical segmentation atlas creation
- How can I create *subcortical segmentation atlas*?
Using the subcortical segmentation to create automatic segmentation
- How can I create *subcortical segmentation*?
Defacing a subject
- How can I do the defacing of a subject?
Monkey brain processing
- How can I normalize Monkey brain?
DICOM file format info
- How can I see a *DICOM functional image*?
Already incorporated
Coordinate Systems
- What kind of coordinate systems are used?
Low-res vs. high-res vertex positions
- What is the value of a lowres vertex position given a highres
vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >
Direction cosines
- How is the direction cosine information obtained?
DICOM file format info
- DICOM Specifications
Medical Image Formats info.
- FAQ on Medical Image Format
Ftp access
- Ftp access for sending data and receiving binaries from us?
CVS remotely
- How can I CVS checkout files remotely?
PBS (Not relevant to Documentation Wiki)
- How can I use the batch queuing system *PBS* on seychelles?
- How can I hold the queue until some queues finish?
DICOM file format info
- How can I get the *image position/orientation of a DICOM file*?
Tkmedit and talairach coordinates
- Why tksurfer shows non-unit talairach even though talairach.xfm is
a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >