Differences between revisions 1 and 3 (spanning 2 versions)

Needs to be incorporated

Ftp access

Ftp access for sending data and receiving binaries from us?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp >

PBS

How can I use the batch queuing system *PBS* on seychelles?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS >
How can I hold the queue until some queues finish?

Coordinate Systems

What kind of coordinate systems are used?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords >

Low-res vs. high-res vertex positions

What is the value of a lowres vertex position given a highres
- vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >

Direction cosines

How is the direction cosine information obtained?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos >

Segmented volume

How can I create a segmented volume and see it?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#seg >

Template Atlas

How can I create a template atlas file?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#template >

File name extensions

What is the use of @ and # for filename?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound >

Talairach transformed image

How can I create talairach transformed image?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform >

Tkmedit and talairach coordinates

Why tksurfer shows non-unit talairach even though talairach.xfm is
- a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >

Data formats in lh/rh.sulc.

What are the data in *lh.sulc* and rh.sulc?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc >

Cortical parcellation

How can I do *cortical parcellation*?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc >

Subcortical segmentation atlas creation

How can I create *subcortical segmentation atlas*?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#gca >

Using the subcortical segmentation to create automatic segmentation

How can I create *subcortical segmentation*?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor >

Defacing a subject

How can I do the defacing of a subject?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#deface >

Monkey brain processing

How can I normalize Monkey brain?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey >

DICOM file format info

DICOM Specifications
- < http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html >
How can I see a *DICOM functional image*?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom >
How can I get the *image position/orientation of a DICOM file*?

CVS remotely

How can I CVS checkout files remotely?
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs >

Medical Image Formats info.

FAQ on Medical Image Format
- < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat >

-  ⇤ ← Revision 1 as of 2004-07-30 10:36:30 → 
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+   ← Revision 3 as of 2004-07-30 10:49:31 → ⇥
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+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#coords>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords >
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-      vertex position? <http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras>
+      vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#seg>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#seg >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#template>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#template >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform >
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-      a unit matrix? <http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal>
+      a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#gca>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#gca >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor >
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+Line 77:
-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#deface>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#deface >
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+Line 83:
-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs >
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-      <http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat>
+      < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat >
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