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| Ftp access | = Needs to be incorporated = |
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| * Ftp access for sending data and receiving binaries from us? <http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp> PBS * How can I use the batch queuing system *PBS* on seychelles? <http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS> * How can I hold the queue until some queues finish? Coordinate Systems * What kind of coordinate systems are used? <http://www.nmr.mgh.harvard.edu/%7Etosa/#coords> Low-res vs. high-res vertex positions * What is the value of a lowres vertex position given a highres vertex position? <http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras> Direction cosines * How is the direction cosine information obtained? <http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos> |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#seg> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#seg > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#template> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#template > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform > |
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| a unit matrix? <http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal> | a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#gca> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#gca > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#deface> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#deface > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey > DICOM file format info * How can I see a *DICOM functional image*? < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom > = Already incorporated = Coordinate Systems * What kind of coordinate systems are used? < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords > Low-res vs. high-res vertex positions * What is the value of a lowres vertex position given a highres vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras > Direction cosines * How is the direction cosine information obtained? < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html> | < http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html > |
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| * How can I see a *DICOM functional image*? <http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom> * How can I get the *image position/orientation of a DICOM file*? |
Medical Image Formats info. * FAQ on Medical Image Format < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat > Ftp access * Ftp access for sending data and receiving binaries from us? < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp > |
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| <http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs > |
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| Medical Image Formats info. | PBS (Not relevant to Documentation Wiki) |
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| * FAQ on Medical Image Format <http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat> |
* How can I use the batch queuing system *PBS* on seychelles? < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS > * How can I hold the queue until some queues finish? |
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| DICOM file format info | |
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| * How can I get the *image position/orientation of a DICOM file*? | |
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Needs to be incorporated
Segmented volume
- How can I create a segmented volume and see it?
Template Atlas
- How can I create a template atlas file?
File name extensions
- What is the use of @ and # for filename?
Talairach transformed image
- How can I create talairach transformed image?
Tkmedit and talairach coordinates
- Why tksurfer shows non-unit talairach even though talairach.xfm is
a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >
Data formats in lh/rh.sulc.
- What are the data in *lh.sulc* and rh.sulc?
Cortical parcellation
- How can I do *cortical parcellation*?
Subcortical segmentation atlas creation
- How can I create *subcortical segmentation atlas*?
Using the subcortical segmentation to create automatic segmentation
- How can I create *subcortical segmentation*?
Defacing a subject
- How can I do the defacing of a subject?
Monkey brain processing
- How can I normalize Monkey brain?
DICOM file format info
- How can I see a *DICOM functional image*?
Already incorporated
Coordinate Systems
- What kind of coordinate systems are used?
Low-res vs. high-res vertex positions
- What is the value of a lowres vertex position given a highres
vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >
Direction cosines
- How is the direction cosine information obtained?
DICOM file format info
- DICOM Specifications
Medical Image Formats info.
- FAQ on Medical Image Format
Ftp access
- Ftp access for sending data and receiving binaries from us?
CVS remotely
- How can I CVS checkout files remotely?
PBS (Not relevant to Documentation Wiki)
- How can I use the batch queuing system *PBS* on seychelles?
- How can I hold the queue until some queues finish?
DICOM file format info
- How can I get the *image position/orientation of a DICOM file*?