Needs to be incorporated

Segmented volume

• How can I create a segmented volume and see it?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#seg >

Template Atlas

• How can I create a template atlas file?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#template >

File name extensions

• What is the use of @ and # for filename?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound >

Talairach transformed image

• How can I create talairach transformed image?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform >

Tkmedit and talairach coordinates

• Why tksurfer shows non-unit talairach even though talairach.xfm is

  • a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >

Data formats in lh/rh.sulc.

• What are the data in *lh.sulc* and rh.sulc?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc >

Cortical parcellation

• How can I do *cortical parcellation*?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc >

Subcortical segmentation atlas creation

• How can I create *subcortical segmentation atlas*?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#gca >

Using the subcortical segmentation to create automatic segmentation

• How can I create *subcortical segmentation*?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor >

Defacing a subject

• How can I do the defacing of a subject?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#deface >

Monkey brain processing

• How can I normalize Monkey brain?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey >

DICOM file format info

• How can I see a *DICOM functional image*?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom >

Already incorporated

Coordinate Systems

• What kind of coordinate systems are used?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords >

Low-res vs. high-res vertex positions

• What is the value of a lowres vertex position given a highres

  • vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >

Direction cosines

• How is the direction cosine information obtained?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos >

DICOM file format info

• DICOM Specifications

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html >

Medical Image Formats info.

• FAQ on Medical Image Format

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat >

Ftp access

• Ftp access for sending data and receiving binaries from us?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp >

CVS remotely

• How can I CVS checkout files remotely?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs >

PBS (Not relevant to Documentation Wiki)

• How can I use the batch queuing system *PBS* on seychelles?

  • < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS >

• How can I hold the queue until some queues finish?

DICOM file format info

• How can I get the *image position/orientation of a DICOM file*?