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| This page describes how to update Freeview within a !FreeSurfer v6 installation. | This page describes how to update Freeview within a !FreeSurfer v6 installation. On Linux this involves updating a single file in your {{{FREESURFER_HOME/bin}}} directory. On Mac it involves replacing the Freeview.app folder in your {{{FREESURFER_HOME}}} directory. A backup should always be made of the file (or directory) before it is replaced. ''Please note the development versions of Freeview will contain the most up to date features but lacks the rigorous testing done before a major release. Therefore, it is imperative that you back up your existing version before replacing it with the development version.'' |
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| 1. Download the latest "development version" of Freeview using the following link. Again, overwriting the origin {{{freeview.bin}}} file may require {{{sudo}}} access: | 1. Download the latest "development version" of Freeview using the following link. Again, overwriting the original {{{freeview.bin}}} file may require sudo access: |
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| $FREESURFER_HOME/bin | cd $FREESURFER_HOME/bin |
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| 1. You should now have the new freeview application which is opened by typing {{{freeview}}} on the command line (after sourcing Freesurfer): {{{ freeview }}} |
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1. Go into your {{{$FREESURFER_HOME}}} and create a backup of your existing freeview app (this ''may'' require sudo access): {{{ cd $FREESURFER_HOME cp Freeview.app Freeview-backup.app }}} 2. Download the dev, standalone freeview tarball from here: [[https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/freeview_osx.tar.gz|freeview_osx.tar.gz]] 3. Untar freeview within your {{{$FREESURFER_HOME}}} (this ''may'' require sudo): {{{ cd $FREESURFER_HOME tar -xzvf /path/to/freeview_osx.tar.gz }}} 4. If you are replacing freeview in a stable freesurfer release, then you must also remove the line "`source $FREESURFER_HOME/sources.csh`" from the `$FREESURFER_HOME/bin/freeview` script |
This page describes how to update Freeview within a FreeSurfer v6 installation. On Linux this involves updating a single file in your FREESURFER_HOME/bin directory. On Mac it involves replacing the Freeview.app folder in your FREESURFER_HOME directory. A backup should always be made of the file (or directory) before it is replaced.
Please note the development versions of Freeview will contain the most up to date features but lacks the rigorous testing done before a major release. Therefore, it is imperative that you back up your existing version before replacing it with the development version.
Linux
Go into your $FREESURFER_HOME/bin and create a backup of your existing freeview.bin file (this may require sudo access):
cd $FREESURFER_HOME/bin cp freeview.bin freeview.bin.BKP
Download the latest "development version" of Freeview using the following link. Again, overwriting the original freeview.bin file may require sudo access:
Make sure the new freeview.bin file is made executable. This is acheived via the following command:
cd $FREESURFER_HOME/bin chmod a+x freeview.bin
You should now have the new freeview application which is opened by typing freeview on the command line (after sourcing Freesurfer):
freeview
Mac
Go into your $FREESURFER_HOME and create a backup of your existing freeview app (this may require sudo access):
cd $FREESURFER_HOME cp Freeview.app Freeview-backup.app
- Download the dev, standalone freeview tarball from here:
Untar freeview within your $FREESURFER_HOME (this may require sudo):
cd $FREESURFER_HOME tar -xzvf /path/to/freeview_osx.tar.gz
4. If you are replacing freeview in a stable freesurfer release, then you must also remove the line "source $FREESURFER_HOME/sources.csh" from the $FREESURFER_HOME/bin/freeview script