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| Please use this page to contribute your own scripts. Use the existing format on this page to create a link to a new page, then insert your script in the new page. Please keep your entry on this page short and descriptive, and use the new page to go more in depth. | Please use this page to contribute your own scripts. Use the existing format on this page to create a link to a new page, then insert your script in the new page. Please keep your entry on this page short and descriptive, and use the new page to go more in depth. For more instructions, check the comments that are visible when you edit this page. |
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| Use three curly braces ( { { { or } } } without the spaces) at the beginning and end of your script so that line breaks are preserved. | |
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| ## Make sure to make a unique name for your page. After you create the entry on this page ## and save the changes, you can click on the link to create your new page. |
## Please use this format for entries. After you create the entry on this page ## and save the changes, you can click on the new link to create and go to your new page. |
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| ## For the page name, use the following format: ## [wiki:/ItemNumber Name of script] |
## * Name of program - Page name - Description ## ## For the page name, use the following format: [wiki:/ItemNumber Name of script] ## ## For example, if the last script on this page is FortyTwo, and you have a script for ## tkmedit that takes a screenshot in mosaic mode, this would be your entry: ## ## * tkmedit - [wiki:/FortyThree Make screenshot of mosaic] - Loads data, switches to ## mosaic mode, and takes a screenshot |
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| * Scuba - [wiki:/One Read data and make snapshots] - Here is a sample script that loads up different surface files and saves screen captures. | * scuba - [[/One|Read data and make snapshots]] - Here is a sample script that loads up different surface files and saves screen captures. * recon-all - [[/Two|Multiple recon-all]] - Here some command to recon-all multiple subjects. * roi - [[/kslays/roi|Create a functional ROI spreadsheet]] - This script will take a list of ROI labels created for one subject, copy it to many subjects (mrilabel2label), create thresholded ROIs from functional activation (func2roi-sess), and output text summaries for excel or spss (roisummary-sess). You can do this for a list of analyses and contrasts. * qdec - [[/ppaulo/qdec-coord|Export Values from QDEC Experiment]]- Script to retrieve the scalar values from each subject associated with a fsaverage inflated surface. |
Please use this page to contribute your own scripts. Use the existing format on this page to create a link to a new page, then insert your script in the new page. Please keep your entry on this page short and descriptive, and use the new page to go more in depth. For more instructions, check the comments that are visible when you edit this page.
Use three curly braces ( { { { or } } } without the spaces) at the beginning and end of your script so that line breaks are preserved.
Scripts
scuba - Read data and make snapshots - Here is a sample script that loads up different surface files and saves screen captures.
recon-all - Multiple recon-all - Here some command to recon-all multiple subjects.
roi - Create a functional ROI spreadsheet - This script will take a list of ROI labels created for one subject, copy it to many subjects (mrilabel2label), create thresholded ROIs from functional activation (func2roi-sess), and output text summaries for excel or spss (roisummary-sess). You can do this for a list of analyses and contrasts.
qdec - Export Values from QDEC Experiment- Script to retrieve the scalar values from each subject associated with a fsaverage inflated surface.