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| Processor Speed: 2.8GHz or higher, at least 2 physical cores<<BR>> RAM: 16GB or more recommended<<BR>> |
Processor Speed: 2.8GHz or higher<<BR>> RAM: 8GB for recon, 16GB suggested for viewing graphics<<BR>> |
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| ||'''OS''' || '''Build Platform''' || '''Version''' || '''Release Date''' || '''Download''' || '''Size''' || || Linux || CentOS 6 x86_64 (64b) tar archive || 7.0.0 beta 1 || Feb 2019 || link TBD ||4.4G|| || Linux || CentOS 6 x86_64 (64b) RPM installer || 7.0.0 beta 1 || Feb 2019 || link TBD ||3.7G|| || Linux || CentOS 7 x86_64 (64b) tar archive || 7.0.0 beta 1 || Feb 2019 || link TBD ||4.2G|| || Linux || CentOS 7 x86_64 (64b) RPM installer || 7.0.0 beta 1 || Feb 2019 || link TBD ||3.6G|| || macOS || MacOS X (64b Intel) tar archive || 7.0.0 beta 1 || Feb 2019 || link TBD || 4.0G || || macOS || MacOS X (64b Intel) PKG installer || 7.0.0 beta 1 || Feb 2019 || link TBD || 4.0G || |
||'''OS''' || '''Build Platform''' || '''Version''' || '''Release Date''' || '''File Name''' || '''Download''' || '''Size''' || || Linux || CentOS 6 x86_64 (64b) tar archive || 7.0.0 beta 1 || Feb 2019 || freesurfer-linux-centos6_x86_64-dev.tar.gz || link TBD ||4.3G|| || Linux || CentOS 6 x86_64 (64b) RPM installer || 7.0.0 beta 1 || Feb 2019 || freesurfer-CentOS6-7.0.0-0.1.b1.x86_64.rpm || link TBD ||3.7G|| || Linux || CentOS 7 x86_64 (64b) tar archive || 7.0.0 beta 1 || Feb 2019 || freesurfer-linux-centos7_x86_64-dev.tar.gz || link TBD ||4.2G|| || Linux || CentOS 7 x86_64 (64b) RPM installer || 7.0.0 beta 1 || Feb 2019 || freesurfer-CentOS7-7.0.0-0.1.b1.x86_64.rpm || link TBD ||3.6G|| || macOS || MacOS X (64b Intel) tar archive || 7.0.0 beta 1 || Feb 2019 || freesurfer-darwin-macOS_HighSierra-dev.tar.gz || link TBD || 4.0G || || macOS || MacOS X (64b Intel) PKG installer || 7.0.0 beta 1 || Feb 2019 || freesurfer-MacOS-7.0.0b1-x86_64.pkg || link TBD || 4.0G || |
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| == Install and Setup == | '''Linux install and setup:''' [[https://surfer.nmr.mgh.harvard.edu/fswiki//dev7beta1_linux|here]]. |
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| '''Linux:''' On Linux systems, the tar archive file (.tar.gz) can be expanded under any convenient path/subdirectory on your machine you have permission to write to. For example, you can expand the tar archive under your $HOME directory. To install freesurfer under a recommended shared system location, e.g., {{{/usr/local}}}, you will typically need sudo or root privileges. Please note that if you have sudo/root privileges, then you should consider using the RPM file (.rpm) to install the freesurfer 7.0.0 beta 1 release under {{{/usr/local}}}. The linux package management tools provide the advantage of trying to install any software packages freesurfer depends upon that are not already installed on your system as part of installing freesurfer under {{{/usr/local/freesurfer/<package version>}}}. ''Example of placing the CentOS7 tar archive under the $HOME directory for user "tester" w/o any sudo/root privileges. Setup commands follow. Shell is bash or Bourne shell.'' {{{ $ cd $HOME $ pwd /home/tester $ tar -zxvpf freesurfer-linux-centos7_x86_64-dev.tar.gz x freesurfer/ x freesurfer/WMParcStatsLUT.txt x freesurfer/sessions/ x freesurfer/sessions/README ... .. <rest of output deleted> $ cd freesurfer $ pwd /home/tester/freesurfer $ export FREESURFER_HOME=/home/tester/freesurfer $ export SUBJECTS_DIR=$FREESURFER_HOME/subjects $ source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-local-build-xxxxxx -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/tester/freesurfer FSFAST_HOME /home/tester/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /home/tester/freesurfer/subjects MNI_DIR /home/tester/freesurfer/mni $ which freeview /home/tester/freesurfer/bin/freeview }}} ''Example of placing the CentOS7 tar archive under the system location /usr/local by user "tester" using sudo/root privileges. Setup commands follow. Shell is bash or Bourne shell.'' {{{ $ cd $HOME $ pwd /home/tester $ sudo tar -C /usr/local -zxvpf freesurfer-linux-centos7_x86_64-dev.tar.gz x freesurfer/ x freesurfer/WMParcStatsLUT.txt x freesurfer/sessions/ x freesurfer/sessions/README ... .. <rest of output deleted> $ export FREESURFER_HOME=/usr/local/freesurfer $ export SUBJECTS_DIR=$FREESURFER_HOME/subjects $ source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-local-build-xxxxxx -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer FSFAST_HOME /usr/local/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer/subjects MNI_DIR /usr/local/freesurfer/mni $ which freeview /usr/local/freesurfer/bin/freeview }}} |
'''Mac install and setup:''' [[https://surfer.nmr.mgh.harvard.edu/fswiki//dev7beta1_mac|here]]. |
FreeSurfer Release 7 System Requirements
Summary of Requirements:
Operating Systems:
Linux - we use/test CentOS6, CentOS7, Ubuntu18
MacOS - we use/test 10.13 High Sierra, 10.14 Mojave, 10.15 Catalina
Processor Speed: 2.8GHz or higher
RAM: 8GB for recon, 16GB suggested for viewing graphics
Graphics card: 3D graphics card with its own graphics memory & accelerated OpenGL drivers
Size of installed image: 10GB
Typical size of a processed subject: 300MB
Other requirements: Matlab (only needed to run FS-FAST, the fMRI analysis stream)
FreeSurfer 7.0.0 beta 1 Notes
Important Note: When processing a group of subjects for your study, it is essential to process all your subjects with the same version of FreeSurfer, on the same OS platform and vendor, and for safety, even the same version of the OS. While we continue to work to ensure that results match across platforms, there are none-the-less system-level libraries that are OS dependent. An exception to this rule is that you may view and edit files across any platform or version, and run some post-processing tools (outside the recon-all stream) if you check with us first (for instance you may run the longitudinal processing with newer versions).
OS |
Build Platform |
Version |
Release Date |
File Name |
Download |
Size |
Linux |
CentOS 6 x86_64 (64b) tar archive |
7.0.0 beta 1 |
Feb 2019 |
freesurfer-linux-centos6_x86_64-dev.tar.gz |
link TBD |
4.3G |
Linux |
CentOS 6 x86_64 (64b) RPM installer |
7.0.0 beta 1 |
Feb 2019 |
freesurfer-CentOS6-7.0.0-0.1.b1.x86_64.rpm |
link TBD |
3.7G |
Linux |
CentOS 7 x86_64 (64b) tar archive |
7.0.0 beta 1 |
Feb 2019 |
freesurfer-linux-centos7_x86_64-dev.tar.gz |
link TBD |
4.2G |
Linux |
CentOS 7 x86_64 (64b) RPM installer |
7.0.0 beta 1 |
Feb 2019 |
freesurfer-CentOS7-7.0.0-0.1.b1.x86_64.rpm |
link TBD |
3.6G |
macOS |
MacOS X (64b Intel) tar archive |
7.0.0 beta 1 |
Feb 2019 |
freesurfer-darwin-macOS_HighSierra-dev.tar.gz |
link TBD |
4.0G |
macOS |
MacOS X (64b Intel) PKG installer |
7.0.0 beta 1 |
Feb 2019 |
freesurfer-MacOS-7.0.0b1-x86_64.pkg |
link TBD |
4.0G |
Linux install and setup: here.
Mac install and setup: here.