Index

Name

dmri_bids_config: Configure TRACULA to run on a BIDS-formatted dataset

Usage

dmri_bids_config --in <directory> --c <configfile>

This script will take as its input a BIDS-formatted study directory and output: 1. A TRACULA configuration file: This file is needed to pre-process the DWI data, reconstruct tracts of interest, etc. with trac-all. 2. A FreeSurfer Group Descriptor (FSGD) file: This file is needed to perform statistics on the output tract measures with mri_glmfit. It will be generated if the input BIDS directory contains a participants.tsv file.

After you run dmri_bids_config It is important that you inspect the configuration file to make sure that everything has been set up the way you intended.

Arguments

Required arguments

At least one of the following two is required

Optional arguments

See also

dmrirc, trac-all

Links

TRACULA

References

If you use TRACULA, please cite:

If you use our measures of head motion, please cite:

If you use the longitudinal stream of TRACULA, please cite:

Reporting Bugs

Report bugs to < analysis-bugs@nmr.mgh.harvard.edu >

Author/s

Anastasia Yendiki