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This applescript can be used to control asegstats2table and aparcstats2table commands in order to generate text/ascii tables of freesurfer stats data for all subjects in the directory at once using 4 mouse clicks!

Please click on the link below to download script;

The main purpose of this script is to simplify and automate conversion process because subjects’ IDs should be written with some options in the command line depending on freesurfer stats file. So users will not need to write any thing when they use this script instead of command line;

  • This script is suitable for MAC only.

    For aseg.stats and wmparc.stats

  • asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt
    • For ?h.aparc.stats

    aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt
    • For ?h.aparc.2009s.stats

    aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt
    • For ?h.BA.stats

    aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt

freesurferstats2table (last edited 2012-02-17 14:19:25 by 2)