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The following scripts can be used to control asegstats2table and aparcstats2table commands in order to generate text/ascii tables of freesurfer stats data for all subjects in the directory at once. Using those scripts will simplify and automate conversion process because subjects’ IDs should be written with some options in the command line depending on freesurfer stats file. So users will not need to write any thing when they use this script instead of command line;

1- Applescript

It works using 4 mouse clicks onlyt!

Please click on the link below to download script;


The illustration video

This script is suitable for MAC only.

2- Bash script

aseg.stats and wmparc.stats

asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt


aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt


aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt


aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt

freesurferstats2table (last edited 2012-02-17 14:19:25 by 2)