Full Text Search: "stats2table"

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freesurferstats2table . . . 9 matches: ...The following scripts can be used to control asegstats2table and aparcstats2table commands in order to generate text/ascii tables of freesurfer stats data for all subjects in the ...
aparcstats2table . . . 4 matches: ...= aparcstats2table = == Introduction == This script will generate text/ascii tables of freesurfer parcellation stats data, ?h.aparc.stats. This can then be easily imported into a ...
asegstats2table . . . 3 matches: ...= asegstats2table = == Introduction == This script will generate text/ascii tables of freesurfer aseg stats data, aseg.stats. This can then be easily imported into a spreadsheet...
PreviousReleaseNotes . . . 24 matches: ...where it created labels with spaces in the name, which causes table parsing in aparcstats2table to fail. * fixed aparcstats2table, asegstats2table where output of the parcellati...
CourseTestCommands . . . 12 matches: ...RIAL_DATA/buckner_data/tutorial_subjs/group_analysis_tutorial cd $SUBJECTS_DIR asegstats2table --subjects 004 021 040 067 080 092 \ --segno 11 17 18 \ --tablefile aseg.vol.ta...
FsTutorial/AnatomicalROIV6.0 . . . 11 matches: ... table of segmentation volumes using the 6 subjects mentioned above. '' '' {{{ asegstats2table --subjects 004 021 040 067 080 092 \ --segno 11 17 18 \ --tablefile aseg.vol.ta...
FsTutorial/AnatomicalROI . . . 9 matches: ... table of segmentation volumes using the 6 subjects mentioned above. '' '' {{{ asegstats2table --subjects 004 021 040 067 080 092 \ --segno 11 17 18 \ --tablefile aseg.vol.ta...
DraftChallenges . . . 7 matches: ...Beginner ''' Goal: ''' To practice collecting different types of measures with asegstats2table Create a table called mean.practice.table that lists the average mean intensities ...
FsTutorial/TraculaStatistics . . . 6 matches: ...pecifically, the text files can be converted into a table using the command {{{tractstats2table}}} and then used for doing GLM analyses with [[mri_glmfit]] or any other statistica...
FsTutorial/AnatomicalROI_tktools . . . 6 matches: ...a table of segmentation volumes using the 6 subjects mentioned above. ---- {{{ asegstats2table --subjects 004 021 040 067 080 092 \ --segno 11 17 18 \ --tablefile aseg.vol.ta...
WikiToDo . . . 4 matches: ...== * create page to list stuff to put on wiki page (done! way to go Jenni!) * asegstats2table aparcstats2table ([[http://surfer.nmr.mgh.harvard.edu/fswiki/asegstats2table|done]]...
MultiModalTutorialV6.0/FMRIGroupAnalysis . . . 4 matches: ...-Hippocampus || == Measure Volume of Positive Activation in Each ROI == {{{ asegstats2table \ --meas volume \ --tablefile ces.pos-masked.vol.stats \ --i fbirn-101/ces.po...
LongitudinalStatistics . . . 4 matches: ...rab the data from all subjects and time points and create a single table are {{{asegstats2table}}} and {{{aparcstats2table}}}. For example to create a table with subcoritical ROI...
FsTutorial/VolumetricGroupAnalysis . . . 4 matches: ... into one table that will be easily read into a spreadsheet program, by using [[asegstats2table]]. You can do this for the tutorial set of subjects with this sample command line:...
FsTutorial/QdecGroupAnalysisV6.0 . . . 4 matches: ...erate Stats Data Tables''' button. This will run the !FreeSurfer utilities {{{asegstats2table}}} and {{{aparcstats2table}}} on your group data. Upon completion (you should see...
LinearMixedEffectsModels . . . 3 matches: ..., time, and demographics. For the '''univariate approach''', using the tools {{{asegstats2table}}} and {{{aparcstats2table}}}, you can directly grab the stats values from the long...
FsTutorial/QuestionAnswers . . . 3 matches: ...ice on this would be appreciated! Thanks!''' Answer: When you run the commands asegstats2table or aparcstats2table, it will put the stats files in a text friendly format that can...
FsTutorial/QdecGroupAnalysis_tktools . . . 3 matches: ...Generate Stats Data Tables'''' button. This will run the !FreeSurfer utilities asegstats2table and aparcstats2table on your group data. Upon completion (you should see the progr...
FsTutorial/QdecGroupAnalysis_freeview . . . 3 matches: ...Generate Stats Data Tables'''' button. This will run the !FreeSurfer utilities asegstats2table and aparcstats2table on your group data. Upon completion (you should see the progr...
FsTutorial/MultiModalFmriGroup_tktools . . . 3 matches: ...-Hippocampus == Measure Volume of Positive Activation in Each ROI == ---- {{{ asegstats2table \ --meas volume \ --tablefile ces.pos-masked.vol.stats \ --i fbirn-101/ces.po...
FsTutorial/MultiModalFmriGroup_freeview . . . 3 matches: ...-Hippocampus || == Measure Volume of Positive Activation in Each ROI == {{{ asegstats2table \ --meas volume \ --tablefile ces.pos-masked.vol.stats \ --i fbirn-101/ces.po...
mri_glmfit . . . 2 matches: ... table as input instead of --y. The stats-table is that of the form produced by asegstats2table or aparcstats2table. --fsgd fname <gd2mtx> Specify the global design matrix with ...
mri_convert . . . 2 matches: ...ttle endian || ||--in_stats_table || Input data is a stats table as produced by asegstats2table or aparcstats2table || ||--out_stats_table || Output data is a stats table (use --l...
UserContributions/Scripts . . . 2 matches: ...stribution of values in your MRI volume. Requires running from matlab. * freesurferstats2table - [[http://surfer.nmr.mgh.harvard.edu/fswiki/freesurferstats2table|Export Values fr...
ThalamicNuclei . . . 2 matches: ...ic-nuclei.rh.v12.T1.stats. Group data can be aggregated with something like {{{ asegstats2table --statsfile=thalamic-nuclei.lh.v12.T1.stats --tablefile=thalamic-nuclei.lh.v12.T1.d...