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| mc-sess -s [sessid] or -sf [sessidfile] -d [srchdir] or -df [srchdirfile] [<options>] |
mc-sess -s [sessid] -d [srchdir] [<options>] [[BR]] mc-sess -sf [sessidfile] -df [srchdirfile] [<options>] |
Name
mc-sess - MotionCorrection using ["AFNI"]
Synopsis
mc-sess -s [sessid] -d [srchdir] [<options>] BR mc-sess -sf [sessidfile] -df [srchdirfile] [<options>]
Positional Arguments
None
Required Flagged Arguments
-s [sessid] or -sf [sessidfile] |
description |
-d [srchdir] or -df [srchdirfile] |
description |
Optional Flagged Arguments
-method [mcmethod] |
afni |
-targnthrun [n] |
uses [nth] run as target. default: [n]=1 |
-toff [m] |
[m] is target image offset |
-fstem [outstem] |
stem of output motion-corrected volume (fmc) |
-fmcstem [outstem] |
stem of output motion-corrected volume (fmc) |
-umask [umask] |
set unix file permission mask to [umask] |
-version |
print version and exit |
-rlf [runlistfile] |
only process those in the [runlist] file |
Outputs
[outstem] |
motion-corrected volume |
Description
mc-sess performs MotionCorrection using the ["AFNI"] MotionCorrection tool. By default, the MotionCorrection is performed to the first run, although you can motion correct to a different run using the -targnthrun flag.
Example 1
mc-sess -s grp1id -d grp1dir
mc-sess using sess id and a search directory
Example 2
mc-sess -sf grp1sessfile -df grp1dirfile
mc-sess using sess id file and search directory file
See Also
["othercommand1"], ["othercommand2"]
Author
Links
FsFast, FsFastMotionCorrection, ["AFNI"]
References
References/Cox1999
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
The images were then motion corrected using the AFNI motion correction tool (http://afni.nimh.nih.gov/afni/).