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mc-sess -s sessid] -d srchdir [<options>] [[BR]] mc-sess -s sessid -d srchdir [<options>] [[BR]]

Navigation(children) Index TableOfContents

Name

mc-sess - MotionCorrection using ["AFNI"]

Synopsis

mc-sess -s sessid -d srchdir [<options>] BR mc-sess -sf sessidfile -df srchdirfile [<options>]

Arguments

Positional Arguments

none

Required Flagged Arguments

-s sessid or -sf sessidfile

description

-d srchdir or -df srchdirfile

description

Optional Flagged Arguments

-method mcmethod

afni

-targnthrun n

uses nth run as target. default: n=1

-toff m

m is target image offset

-fstem outstem

stem of output motion-corrected volume (fmc)

-fmcstem outstem

stem of output motion-corrected volume (fmc)

-umask umask

set unix file permission mask to umask

-version

print version and exit

-rlf runlistfile

only process those in the runlist file

Outputs

outstem

motion-corrected volume

Description

mc-sess performs MotionCorrection using the ["AFNI"] MotionCorrection tool. By default, the MotionCorrection is performed to the first run, although you can motion correct to a different run using the -targnthrun flag.

Examples

Example 1

mc-sess -s grp1id -d grp1dir

mc-sess using sess id and a search directory

Example 2

mc-sess -sf grp1sessfile -df grp1dirfile

mc-sess using sess id file and search directory file

Bugs

none

See Also

["othercommand1"], ["othercommand2"]

Links

FsFast, FsFastMotionCorrect, ["AFNI"]

Methods Description

The images were then motion corrected using the AFNI motion correction tool (http://afni.nimh.nih.gov/afni/).

References

["References/Cox1999"]

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author

DougGreve

mc-sess (last edited 2008-04-29 11:46:19 by localhost)