Name

mc-sess - motion correction using AFNI

Synopsis

mc-sess {-s [sessid] or -sf [sessidfile]} {-d [srchdir] or -df [srchdirfile]}  [<options>]

Positional Arguments

None

Required Flagged Arguments

-s [sessid] or -sf [sessidfile] 
  description

-d [srchdir] or -df [srchdirfile] 
  description

Optional Flagged Arguments

-method [mcmethod]
  afni

-targnthrun [n]
  uses [nth] run as target
  default: [n]=1

-toff [m]
  [m] is target image offset

-fstem [stem]        
  stem of output motion-corrected volume (fmc)

-fmcstem [stem]      
  stem of output motion-corrected volume (fmc)

-umask umask       
  set unix file permission mask to [umask]

-version           
  print version and exit

-rlf [runlistfile]
  only process those in the [runlist] file

Outputs

volume1 - description
volume2 - description

Example 1

mc-sess -s grp1id -d grp1dir

mc-sess using sess id and a search directory

Example 2

mc-sess -sf grp1sessfile -df grp1dirfile

mc-sess using sess id file and search directory file

See Also

["othercommand1"], ["othercommand2"]

Author

DougGreve

Links

FsFast, FsFastMotionCorrection, ["AFNI"]

References

References/Cox1999

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Methods Description

The images were then motion corrected using the AFNI motion correction tool (http://afni.nimh.nih.gov/afni/).

Category

CategoryFsFastCommandsMotionCorrection