Differences between revisions 2 and 7 (spanning 5 versions)
Revision 2 as of 2004-09-01 16:04:21
Size: 2173
Editor: JulieBates
Comment:
Revision 7 as of 2004-09-02 11:41:36
Size: 1440
Editor: DavidTuch
Comment:
Deletions are marked like this. Additions are marked like this.
Line 12: Line 12:
Line 14: Line 13:
mkxsubjreg- Creates new matrix mkxsubjreg - creates new registration matrix between functional and orig volumes
Line 17: Line 16:
mkxsubjreg --srcreg
mkxsubjreg --tarreg

command argA argB -flag1 arg1 -flag2 arg2 [-flag3 arg3] [-flag4 arg4]
mkxsubjreg --srcreg <srcreg.dat> --targreg <targreg.dat>
Line 24: Line 20:
None

|| argA || brief description || detailed description (eg, help file information) ||
|| argB || brief description || detailed description (eg, help file information) ||
none
Line 30: Line 23:

|| --targsubj subjid || default is talairach
|| --xfm xfmrname || xfm file name relative to transforms
|| --sd subjects_dir || default is env SUBJECTS_DIR
|| --fvol funcvol || path to example functional volume
|| --help
|| --version

|| -flag1 arg1 || brief description || detailed description (eg, help file information) ||
|| -flag2 arg2 || brief description || detailed description (eg, help file information) ||
|| --srcreg <srcreg.dat> ||
|| --targreg <targreg.dat>||
Line 42: Line 27:
|| -flag3 arg3 || brief description ||detailed description (eg, help file information) ||
|| -flag4 arg4 || brief description ||detailed description (eg, help file information) ||
 
|| --targsubj <subjid> || default is talairach ||
|| --xfm <xfmrname> || xfm file name relative to transforms ||
|| --sd <subjects_dir> || default is env SUBJECTS_DIR ||
|| --fvol <funcvol> || path to example functional volume ||
|| --help ||
|| --version ||
Line 46: Line 35:

|| srcreg.dat ||
|| targreg.dat ||

|| volume1 || description ||
|| volume2 || description ||
??
Line 54: Line 38:
Creates new registration matrix that maps from the functional
volume of the source subject to the orig of the target subject
through the talairach transform.
mkxsubjreg creates new registration matrix that maps from the functional volume of the source subject to the orig of the target subject through the talairach transform.
Line 60: Line 42:
command foo -i f -o out

description
??
Line 65: Line 44:
command foo -i f -o out -f fvalue

description
??
Line 70: Line 47:
None ??
Line 73: Line 50:
["othercommand1"], ["othercommand2"] ??
Line 79: Line 56:
{{{
description
description
}}}
??
Line 85: Line 59:
["References/Lastname###"] ??
Line 91: Line 65:
JaneSmith DougGreve

Index TableOfContents

Name

mkxsubjreg - creates new registration matrix between functional and orig volumes

Synopsis

mkxsubjreg --srcreg <srcreg.dat> --targreg <targreg.dat>

Arguments

Positional Arguments

none

Required Flagged Arguments

--srcreg <srcreg.dat>

--targreg <targreg.dat>

Optional Flagged Arguments

--targsubj <subjid>

default is talairach

--xfm <xfmrname>

xfm file name relative to transforms

--sd <subjects_dir>

default is env SUBJECTS_DIR

--fvol <funcvol>

path to example functional volume

--help

--version

Outputs

??

Description

mkxsubjreg creates new registration matrix that maps from the functional volume of the source subject to the orig of the target subject through the talairach transform.

Examples

Example 1

??

Example 2

??

Bugs

??

See Also

??

Links

FreeSurfer, FsFast

Methods Description

??

References

??

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

DougGreve

mkxsubjreg (last edited 2008-04-29 11:46:24 by localhost)