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| Describe mri_nl_align here. | ## Note: This page was created with the CommandTemplate ## ## If you're modifying this page please take a look at the ## latest version of CommandTemplate to ensure that you're ## using the latest version of the CommandTemplate ## ## See HelpOnCommandTemplate for description of formatting '''Index''' <<TableOfContents>> = Name = mri_nl_align - pairwise non-linear warp between two 3D volumes = Synopsis = mri_nl_align <source> <destination> <warp> [-view x y z] [-w k] [-z ] [-sigma ] [-dt ] [-intensity l_log_likelihood] [-T initial transformation] = Arguments = == Positional Arguments == || <source> || FIXED volume || volume to which the second argument gets warped || || <target> || MOVING volume || volume that gets warped to thefirst argument || || <warp> || registration output || the warp that aligns the moving volume to the fixed one || == Optional Flagged Arguments == || -view x y z || brief description ||detailed description (eg, help file information) || || -w k || write iterations || write an mgz volume and 3 orthogonal views (.tif) at each k^th iteration || || -z || disabling zero image locations || || || -sigma || || || || -dt || || || || -intensity l_log_likelihood || || || || -T transform || initial transformation || || = Outputs = || <warp> || the resulting non-linear registration warp || = Description = Non-linear volumetric registration between two input volumes. Suited to align mono-modal images as the objective function is SSE. = Examples = == Example 1 == command foo -i f -o out description == Example 2 == command foo -i f -o out -f fvalue description = Bugs = None = See Also = [[othercommand1]], [[othercommand2]] = Links = FreeSurfer, FsFast = Methods Description = {{{ description description }}} = References = [[References/Lastname###]] = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> = Author/s = BruceFischl |
Index
Contents
Name
mri_nl_align - pairwise non-linear warp between two 3D volumes
Synopsis
mri_nl_align <source> <destination> <warp> [-view x y z] [-w k] [-z ] [-sigma ] [-dt ] [-intensity l_log_likelihood] [-T initial transformation]
Arguments
Positional Arguments
<source> |
FIXED volume |
volume to which the second argument gets warped |
<target> |
MOVING volume |
volume that gets warped to thefirst argument |
<warp> |
registration output |
the warp that aligns the moving volume to the fixed one |
Optional Flagged Arguments
-view x y z |
brief description |
detailed description (eg, help file information) |
-w k |
write iterations |
write an mgz volume and 3 orthogonal views (.tif) at each k^th iteration |
-z |
disabling zero image locations |
|
-sigma |
|
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-dt |
|
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-intensity l_log_likelihood |
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-T transform |
initial transformation |
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Outputs
<warp> |
the resulting non-linear registration warp |
Description
Non-linear volumetric registration between two input volumes. Suited to align mono-modal images as the objective function is SSE.
Examples
Example 1
command foo -i f -o out
description
Example 2
command foo -i f -o out -f fvalue
description
Bugs
None
See Also
Links
Methods Description
description description
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>