| Deletions are marked like this. | Additions are marked like this. |
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| mri_average [<options>] [volume 1] [volume 2] ... [volume n] [output volume] | mri_average [<options>] [volume(s)] [output volume] |
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|
|| [volume 1] || first volume to be averaged || || [volume 2] || second volume to be averaged || || [volume n] || final volume to be averaged || || [output volume] || volume resulting from averaging volumes 1 through n || |
|| [volume(s)] || volume(s) to be averaged || || [output volume] || volume resulting from averaging input volume(s) || |
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| || output volume || volume resulting from averaging volumes 1 through n || | || output volume || volume resulting from averaging input volume(s) || |
Name
mri_average - averages a number of volumes
Synopsis
mri_average [<options>] [volume(s)] [output volume]
Positional Arguments
[volume(s)] |
volume(s) to be averaged |
[output volume] |
volume resulting from averaging input volume(s) |
Required Flagged Arguments
none
Optional Flagged Arguments
-a |
rigid alignment of input volumes before averaging |
-dt [float n] |
set dt to n (default=1e-6) |
-tol [float n] |
set tol to n (default=1e-5) |
-conform |
interpolate volume to be isotropic 1mm^3 |
-noconform |
inhibit isotropic volume interpolation |
-reduce [int n] |
reduce input images n (default=2) times |
-sinc [int n] |
using sinc interpolation with windowwidth of 2*n (default=3) |
-trilinear |
use trilinear interpolation |
-window |
apply hanning window to volumes |
-w [int n] |
write snapshots every n iterations |
-t [x] [y] [z] |
translation of second volume |
-r [x] [y] [z] |
rotation of second volume around each axis in degrees |
-m [float n] use momentum n (default=0) |
|
-a |
align volumes before averaging |
-u |
print usage |
Outputs
output volume |
volume resulting from averaging input volume(s) |
Description
description
Examples
Example 1
command foo -i f -o out
description
Example 2
command foo -i f -o out -f fvalue
description
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>