| Deletions are marked like this. | Additions are marked like this. |
| Line 9: | Line 9: |
|
[[Navigation(children)]] '''Index''' [[TableOfContents]] |
|
| Line 13: | Line 17: |
| mri_average [<options>] vol1 vol2 ... outvol | mri_average [<options>] vol1 [vol2 ...] outvol |
| Line 17: | Line 21: |
| || voln || volume(s) to be averaged || | || vol1 [vol2 ...] || volumes to be averaged || |
| Line 21: | Line 25: |
| none | None |
| Line 25: | Line 29: |
|
|| -dt [float n] || set dt to n (default=1e-6) || || -tol [float n] || set tol to n (default=1e-5) || |
|| -dt f || set dt to f (default=1e-6) || || -tol f || set tol to f (default=1e-5) || |
| Line 29: | Line 33: |
|
|| -reduce [int n] || reduce input images n (default=2) times || || -sinc [int n] || using sinc interpolation with windowwidth of 2*n (default=3) || |
|| -reduce n || reduce input images n (default=2) times || || -sinc n || using sinc interpolation with windowwidth of 2*n (default=3) || |
| Line 33: | Line 37: |
|
|| -w [int n] || write snapshots every n iterations || || -t [x] [y] [z] || translation of second volume || || -r [x] [y] [z] || rotation of second volume around each axis in degrees || || -m [float n] use momentum n (default=0) || |
|| -w n || write snapshots every n iterations || || -t x y z || translation of second volume || || -r x y z || rotation of second volume around each axis in degrees || || -m f || use momentum f (default=0) || |
| Line 39: | Line 43: |
| Line 41: | Line 45: |
| || output volume || volume resulting from averaging input volume(s) || | || outvol || volume resulting from averaging input volume(s) || |
| Line 44: | Line 48: |
| description | ?? |
| Line 48: | Line 52: |
|
command foo -i f -o out description |
?? |
| Line 53: | Line 55: |
|
command foo -i f -o out -f fvalue description |
?? |
| Line 64: | Line 64: |
| FreeSurfer, FsFast | FreeSurfer |
| Line 79: | Line 79: |
| JaneSmith | BruceFischl |
Navigation(children) Index TableOfContents
Name
mri_average - averages a number of volumes
Synopsis
mri_average [<options>] vol1 [vol2 ...] outvol
Arguments
Positional Arguments
vol1 [vol2 ...] |
volumes to be averaged |
outvol |
volume resulting from averaging input volume(s) |
Required Flagged Arguments
None
Optional Flagged Arguments
-a |
rigid alignment of input volumes before averaging |
-dt f |
set dt to f (default=1e-6) |
-tol f |
set tol to f (default=1e-5) |
-conform |
interpolate volume to be isotropic 1mm^3 |
-noconform |
inhibit isotropic volume interpolation |
-reduce n |
reduce input images n (default=2) times |
-sinc n |
using sinc interpolation with windowwidth of 2*n (default=3) |
-trilinear |
use trilinear interpolation |
-window |
apply hanning window to volumes |
-w n |
write snapshots every n iterations |
-t x y z |
translation of second volume |
-r x y z |
rotation of second volume around each axis in degrees |
-m f |
use momentum f (default=0) |
-a |
align volumes before averaging |
-u |
print usage |
Outputs
outvol |
volume resulting from averaging input volume(s) |
Description
??
Examples
Example 1
??
Example 2
??
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>