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= Name =
mri_ca_normalize - creates a normalized volume using the brain volume and an input gca file

= Synopsis =
 mri_ca_normalize [<options>] <inbrain1> <inbrain2> ... <atlas> <transform file> <output1> <output2> ...

= Arguments =
== Positional Arguments ==
||inbrain1 || input volume||
||inbrain2 || input volume||
||atlas ||atlas file in gca format||
||xform  || tranform file in lta format||
||output1 || output volume||
||output2 || output volume||

== Required Flagged Arguments ==
None

== Optional Flagged Arguments ==
||-mask || specifies volume to use as mask ||
||-p || specifies the percentage of likely wm to use as control points, the default setting is 50%  ||

= Outputs =
|| outvol || output volume in either mgh or mgz format ||

= Description =
description

= Examples =
== Example 1 ==
mri_ca_normalize -mask -p 0.25 subject1/mri/brain subject1/mri/nu single_one.gca subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh


= Bugs =
None

= See Also =
[[othercommand1]], [[othercommand2]]

= Links =
FreeSurfer, FsFast

= Methods Description =
{{{
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}}}

= References =
[[References/Lastname###]]

= Reporting Bugs =
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

= Author/s =
BruceFischl