Results 1 - 14 of 14 results out of about 3772 pages. (0.97 seconds)
- recon-all . . . 3 matches
- ...For example, if a file called expert.opts is created containing these lines:
{{{
mri_em_register -p .5
mris_fix_topology -s 100
}}}
then the option "-p .5" will be passed to mri_...
- ReconAllTableStableV5.3 . . . 3 matches
- ...z T1.mgz ||T1.mgz ||
||<style="text-align: left;" |3>-[[skullstrip]] ||nu.mgz ||[[mri_em_register]] -skull nu.mgz $FREESURFER_HOME/average/RB_all_withskull_2008-03-26.gca transfor...
- ReconAllTableStableV5.1 . . . 3 matches
- ...z T1.mgz ||T1.mgz ||
||<style="text-align: left;" |3>-[[skullstrip]] ||nu.mgz ||[[mri_em_register]] -skull nu.mgz $FREESURFER_HOME/average/RB_all_withskull_2008-03-26.gca transfor...
- ReconAllTableStableV5 . . . 3 matches
- ...z T1.mgz ||T1.mgz ||
||<style="text-align: left;" |5>-[[skullstrip]] ||nu.mgz ||[[mri_em_register]] -skull nu.mgz $FREESURFER_HOME/average/RB_all_withskull_2008-03-26.gca transfor...
- ReconAllStableTablev4 . . . 3 matches
- ...|3(bgcolor='#FFFFE0'>-skullstrip||<bgcolor='#E0E0FF'>nu.mgz||<bgcolor='#E0E0FF'>[[mri_em_register]] -skull nu.mgz $FREESURFER_HOME/average/RB_all_withskull_2007-08-08.gca transfor...
- ReconAllDevTable . . . 2 matches
- ...mgz T1.mgz ||T1.mgz ||
||<style="text-align:left" |3>-[[skullstrip]] ||nu.mgz ||[[mri_em_register]] -skull nu.mgz $FREESURFER_HOME/average/RB_all_withskull_2016-05-10.vc700.gca tr...
- FreeSurferCommandsRegistration . . . 2 matches
- ...ve an anatomical scan of the
subject that has been processed in Freesurfer!
=== mri_em_register ===
[[mri_em_register]]: 2 inputs, linear, atlas registration
This generates a l...
- skullstrip . . . 1 match
- ...shed for each one for each vol orig, nu and T1, so if you have 12 heights, for example there will be 36 processes.
=== Programs ===
* [[mri_em_register]]
* [[mri_watershed]]...
- skull-lta . . . 1 match
- ...to align volume mri/nu_noneck.mgz with GCA volume
possessing the skull.
Creates the file
{{{
mri/transforms/talairach_with_skull.lta
}}}
=== Programs ===
* [[mri_em_register]]...
- mri_ca_train . . . 1 match
- ....mgz \
$SUBJECTS multi_one.gca
}}}
= See Also =
[[SubcorticalSegmentation]], [[mri_em_register]], [[mri_ca_normalize]]
= References =
* [[https://surfer.nmr.mgh.harvard.edu/...
- gcareg . . . 1 match
- ...REESURFER_HOME/average (see -gca flag for more info).
Creates the file mri/transforms/talairach.lta.
The -autorecon2 stage starts here.
=== Programs ===
* [[mri_em_register]]...
- eTIV . . . 1 match
- ... {{{$SUBJECTS_DIR/subjid/mri/transforms/talairach_with_skull.lta}}} (created by [[mri_em_register]]). The other option, that used in later versions of Freesurfer, is to use the a...
- FreeSurferCommandsVolumeMisc . . . 1 match
- ...ri_ca_label]]
* [[mri_ca_normalize]]
* [[mri_ca_train]]
* [[mri_diff]]
* [[mri_em_register]]
* [[mri_fill]]
* [[mri_gdfglm]]
* [[mri_head]]
* [[mri_info]]
* [[mri...
- FreeSurferCommands . . . 1 match
- ...correct.mni]]
* [[talairach]]
* [[mri_normalize]]
* [[mri_watershed]]
* [[mri_em_register]]
* [[mri_ca_normalize]]
* [[mri_ca_register]]
* [[mri_remove_neck]]
* [[...