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Usage: mri_mask [options] <in vol> <mask vol> <out vol>
This program applies a mask volume (typically skull stripped).
Options:
- -xform %s apply LTA transform to align mask to input volume -invert reversely apply -xform -lta_src %s source volume for -xform (if not available from the xform file) -lta_dst %s target volume for -xform (if not available from the xform file)
-T # threshold mask volume at # (i.e., all values <= T is considered as zero)