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| Usage: mri_mask [options] <in vol> <mask vol> <out vol> | {{{Usage: mri_mask [options] <in vol> <mask vol> <out vol> |
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| -xform %s -- apply LTA transform to align mask to input volume | -xform %s ->apply LTA transform to align mask to input volume |
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| -invert -- reversely apply -xform | -invert ->reversely apply -xform |
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| -lta_src %s -- source volume for -xform (if not available from the xform file) | -lta_src %s ->source volume for -xform (if not available from the xform file) |
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| -lta_dst %s -- target volume for -xform (if not available from the xform file) | -lta_dst %s ->target volume for -xform (if not available from the xform file) |
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| -T # -- threshold mask volume at # (i.e., all values <= T is considered as zero) | -T # ->threshold mask volume at # (i.e., all values <= T is considered as zero) }}} |
{{{Usage: mri_mask [options] <in vol> <mask vol> <out vol>
This program applies a mask volume (typically skull stripped).
Options:
-xform %s ->apply LTA transform to align mask to input volume
-invert ->reversely apply -xform
-lta_src %s ->source volume for -xform (if not available from the xform file)
-lta_dst %s ->target volume for -xform (if not available from the xform file)
-T # ->threshold mask volume at # (i.e., all values <= T is considered as zero) }}}