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| {{{Usage: mri_mask [options] <in vol> <mask vol> <out vol> |
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| This program applies a mask volume (typically skull stripped). |
'''Index''' <<TableOfContents>> |
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Options: -xform %s ->apply LTA transform to align mask to input volume |
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| -invert ->reversely apply -xform |
= Name = mri_mask - This program applies a mask volume ( typically skull stripped ) |
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| -lta_src %s ->source volume for -xform (if not available from the xform file) |
= Synopsis = mri_mask [options] <in vol> <mask vol> <out vol> |
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| -lta_dst %s ->target volume for -xform (if not available from the xform file) | |
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| -T # ->threshold mask volume at # (i.e., all values <= T is considered as zero) }}} |
= Arguments = == Positional Arguments == || in vol || input volume || || || mask vol || mask volume || || |
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== Required Flagged Arguments == == Optional Flagged Arguments == || -xform %s || apply LTA transform to align mask to input volume || || || -invert || reversely apply -xform || || || lta_src %s || source volume for -xform (if not available from the xform file) || || || lta_dst %s || target volume for -xform (if not available from the xform file) || || || -T || threshold mask volume at # (i.e., all values <= T is considered as zero) || || = Outputs = || out vol || output volume || || = Description = = Examples = == Example 1 == description == Example 2 == description = Bugs = None = See Also = = Links = FreeSurfer = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> |
Index
Contents
Name
mri_mask - This program applies a mask volume ( typically skull stripped )
Synopsis
mri_mask [options] <in vol> <mask vol> <out vol>
Arguments
Positional Arguments
in vol |
input volume |
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mask vol |
mask volume |
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Required Flagged Arguments
Optional Flagged Arguments
-xform %s |
apply LTA transform to align mask to input volume |
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-invert |
reversely apply -xform |
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lta_src %s |
source volume for -xform (if not available from the xform file) |
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lta_dst %s |
target volume for -xform (if not available from the xform file) |
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-T |
threshold mask volume at # (i.e., all values <= T is considered as zero) |
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Outputs
out vol |
output volume |
|
Description
Examples
Example 1
description
Example 2
description
Bugs
None
See Also
Links
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>