Index
Contents
Name
mri_mask - This program applies a mask volume ( typically skull stripped )
Synopsis
mri_mask [options] <in vol> <mask vol> <out vol>
Arguments
Positional Arguments
in vol |
input volume |
|
mask vol |
mask volume |
|
Required Flagged Arguments
Optional Flagged Arguments
-xform %s |
apply LTA transform to align mask to input volume |
|
-invert |
reversely apply -xform |
|
lta_src %s |
source volume for -xform (if not available from the xform file) |
|
lta_dst %s |
target volume for -xform (if not available from the xform file) |
|
-T |
threshold mask volume at # (i.e., all values <= T is considered as zero) |
|
Outputs
out vol |
output volume |
|
Description
Examples
Example 1
description
Example 2
description
Bugs
None
See Also
Links
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>