Index

Name

mri_motion_correct2 - averages a number of volumes and performs MotionCorrection (reincarnate of mri_motion_correct)

Synopsis

mri_motion_correct -o outvol -i invol1 -i invol2 [<options>]

Arguments

Positional Arguments

outvol

description

invol1

description

invol2

description

Required Flagged Arguments

-o outvol -i invol1 -i invol2

Optional Flagged Arguments

-wild

assume unmatched args are input files

-tmpdir tmpdir

directory for temporary files

-nocleanup

do not delete temporary files

-umask umask

set unix file permission mask

-cm

COR volumes conform to min voxel size

-version

print version and exit

-debug

print lots of stuff to screen

Outputs

outvol

averaged and motion corrected volume

Description

description

Examples

Example 1

mri_motion_correct2 -o ../orig -i 002 -i 003

motion correct and average the 2 COR volumes and output to a COR volume in ../orig

Example 2

mri_motion_correct2 -cm -i 001.mgz -i 002.mgz -i 003.mgz -o ../orig.mgz

motion correct and average the 3 .mgz volumes, conform to min voxel size, and output to ../orig.mgz

Bugs

None

See Also

mri_motion_correct, mri_info, mri_convert, minctracc, mincresample, mincaverage

Links

FreeSurfer

Methods Description

??

References

References/Lastname###

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

DougGreve