|
Size: 954
Comment: brief summary
|
Size: 1080
Comment: Added Description heading.
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| ## see dtrecon as an exmaple | |
| Line 2: | Line 3: |
mri_motion_correct - averages a number of volumes and corrects for motion |
{{{ mri_motion_correct - averages a number of volumes and corrects for motion }}} |
| Line 6: | Line 7: |
| command argA argB -flag1 <arg1> -flag2 <arg2> -flag3 <arg3> | {{{ mri_motion_correct [outfile] [infile1] [infile2] [<options>] }}} |
| Line 9: | Line 12: |
| argA | {{{ [outfile] description |
| Line 11: | Line 16: |
| Description | [infile1] description |
| Line 13: | Line 19: |
| argB Description |
[infile2] description }}} |
| Line 18: | Line 24: |
| -flag1 <arg1> Description - flag2 <arg2> Description |
{{{ None }}} |
| Line 27: | Line 29: |
-flag3 <arg3> Description. |
{{{ -?? [??] description description }}} |
| Line 33: | Line 36: |
| file1 Description file2 Description |
{{{ orig - averaged and motion corrected volume }}} |
| Line 42: | Line 41: |
| command argA argB -flag1 foo -flag2 goo Description = Example 2 = command argA argB -flag1 foo -flag2 goo -flag3 hoo Description |
{{{ mri_motion_correct ../orig 002 003 }}} |
| Line 52: | Line 46: |
| ["command2"] ["command3"] |
["minctrac"] |
| Line 57: | Line 49: |
| JaneSmith | JaneSmith |
| Line 60: | Line 52: |
| Command``Guide | FreeSurfer, FsFast |
| Line 64: | Line 56: |
| NameYear | ["References/NameYear"] = Description = |
| Line 67: | Line 61: |
| Report bugs to <> | Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> = Methods Description = mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes |
| Line 71: | Line 68: |
| Category``Stream``Command | CategoryFreeSurferCommandMotionCorrection |
Name
mri_motion_correct - averages a number of volumes and corrects for motion
Synopsis
mri_motion_correct [outfile] [infile1] [infile2] [<options>]
Positional Arguments
[outfile] description [infile1] description [infile2] description
Required Flagged Arguments
None
Optional Flagged Arguments
-?? [??] description description
Outputs
orig - averaged and motion corrected volume
Example 1
mri_motion_correct ../orig 002 003
See Also
["minctrac"]
Author
Links
References
["References/NameYear"]
Description
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes