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| mri_motion_correct arg1 -i <arg2> -o <arg3> [<options>] | mri_motion_correct [outfile] [infile1] [infile2] [<options>] |
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| arg1 | [outfile] |
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[infile1] description [infile2] |
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| -i <arg2> description description -o <arg3> description description |
None |
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| -f <fvalue> description description -g <gvalue> |
-?? [??] |
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| volume1 - description volume2 - description |
orig - averaged and motion corrected volume |
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| mri_motion_correct foo -i f -o out }}} = Example 2 = {{{ mri_motion_correct foo -i f -o out -f fvalue |
mri_motion_correct ../orig 002 003 |
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| ["othercommand1"] ["othercommand2"] |
["minctrac"] |
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| JaneSmith | JaneSmith |
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| FreeSurfer | FreeSurfer, FsFast |
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| ["References/NameYear"] | ["References/NameYear"] = Description = |
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| Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> | Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> = Methods Description = mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes |
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| CategoryFreeSurferCommandMotionCorrection | CategoryFreeSurferCommandMotionCorrection |
Name
mri_motion_correct - averages a number of volumes and corrects for motion
Synopsis
mri_motion_correct [outfile] [infile1] [infile2] [<options>]
Positional Arguments
[outfile] description [infile1] description [infile2] description
Required Flagged Arguments
None
Optional Flagged Arguments
-?? [??] description description
Outputs
orig - averaged and motion corrected volume
Example 1
mri_motion_correct ../orig 002 003
See Also
["minctrac"]
Author
Links
References
["References/NameYear"]
Description
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes