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| ## see dtrecon as an exmaple | ## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting |
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| mri_motion_correct - averages a number of volumes and performs MotionCorrection = Synopsis = mri_motion_correct [outfile] [infile1] [infile2] [<options>] = Positional Arguments = || [outfile] || description || || [infile1] || description || || [infile2] || description || = Required Flagged Arguments = None = Optional Flagged Arguments = ||-?? [??] || description || = Outputs = || orig || averaged and motion corrected volume || = Description = description = Example 1 = mri_motion_correct ../orig 002 003 description = See Also = ["othercommand1"], ["othercommand2"] = Author/s = BruceFischl = Links = FreeSurfer = References = ["References/Lastname###"] = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> = Methods Description = |
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| mri_motion_correct - averages a number of volumes and corrects for motion }}} = Synopsis = {{{ mri_motion_correct arg1 -i <arg2> -o <arg3> [<options>] |
description description |
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| = Positional Arguments = {{{ arg1 description description }}} = Required Flagged Arguments = {{{ -i <arg2> description description -o <arg3> description description }}} = Optional Flagged Arguments = {{{ -f <fvalue> description description -g <gvalue> description description }}} = Outputs = {{{ volume1 - description volume2 - description }}} = Example 1 = {{{ mri_motion_correct foo -i f -o out }}} = Example 2 = {{{ mri_motion_correct foo -i f -o out -f fvalue }}} = See Also = ["othercommand1"] ["othercommand2"] = Author = JaneSmith = Links = FreeSurfer = References = ## For example: ["Belliveau1991"] ["References/NameYear"] = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> |
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| ## For example: CategoryFreeSurferCommandVolumeConversion CategoryFreeSurferCommandMotionCorrection |
CategoryFreeSurferCommandsMotionCorrection |
Name
mri_motion_correct - averages a number of volumes and performs MotionCorrection
Synopsis
mri_motion_correct [outfile] [infile1] [infile2] [<options>]
Positional Arguments
[outfile] |
description |
[infile1] |
description |
[infile2] |
description |
Required Flagged Arguments
None
Optional Flagged Arguments
-?? [??] |
description |
Outputs
orig |
averaged and motion corrected volume |
Description
description
Example 1
mri_motion_correct ../orig 002 003
description
See Also
["othercommand1"], ["othercommand2"]
Author/s
Links
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
description description